Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 24344 | 5' | -54.7 | NC_005264.1 | + | 66521 | 0.66 | 0.95389 |
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Target: 5'- cGAGcgUGCCcugacgacgaCCGCGUUGCGGGCGuCGg -3' miRNA: 3'- cCUCa-ACGGa---------GGUGCAGUGCCUGU-GC- -5' |
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| 24344 | 5' | -54.7 | NC_005264.1 | + | 157632 | 0.66 | 0.95389 |
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Target: 5'- aGAGcUUcGCCUcgCCGCGgCGCGaGACACGa -3' miRNA: 3'- cCUC-AA-CGGA--GGUGCaGUGC-CUGUGC- -5' |
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| 24344 | 5' | -54.7 | NC_005264.1 | + | 894 | 0.66 | 0.957689 |
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Target: 5'- uGGGUguacgGCC-CCGUGUCGCGGGC-CGc -3' miRNA: 3'- cCUCAa----CGGaGGUGCAGUGCCUGuGC- -5' |
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| 24344 | 5' | -54.7 | NC_005264.1 | + | 38848 | 0.66 | 0.957689 |
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Target: 5'- uGAGcgUGCCU--ACGUCGCGGAgcuccuCGCGg -3' miRNA: 3'- cCUCa-ACGGAggUGCAGUGCCU------GUGC- -5' |
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| 24344 | 5' | -54.7 | NC_005264.1 | + | 119920 | 0.66 | 0.957689 |
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Target: 5'- uGGGUguacgGCC-CCGUGUCGCGGGC-CGc -3' miRNA: 3'- cCUCAa----CGGaGGUGCAGUGCCUGuGC- -5' |
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| 24344 | 5' | -54.7 | NC_005264.1 | + | 59752 | 0.66 | 0.961268 |
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Target: 5'- uGGGGcgGCggCUGCGaCGCGGACGCu -3' miRNA: 3'- -CCUCaaCGgaGGUGCaGUGCCUGUGc -5' |
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| 24344 | 5' | -54.7 | NC_005264.1 | + | 34380 | 0.66 | 0.963977 |
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Target: 5'- aGGAGUUcuuCCUCCACGUguacucucgcuaAUGGGgGCGg -3' miRNA: 3'- -CCUCAAc--GGAGGUGCAg-----------UGCCUgUGC- -5' |
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| 24344 | 5' | -54.7 | NC_005264.1 | + | 153407 | 0.66 | 0.963977 |
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Target: 5'- aGGAGUUcuuCCUCCACGUguacucucgcuaAUGGGgGCGg -3' miRNA: 3'- -CCUCAAc--GGAGGUGCAg-----------UGCCUgUGC- -5' |
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| 24344 | 5' | -54.7 | NC_005264.1 | + | 34129 | 0.66 | 0.964632 |
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Target: 5'- ----cUGCCU-CugGUgACGGGCGCGu -3' miRNA: 3'- ccucaACGGAgGugCAgUGCCUGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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