Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 24344 | 5' | -54.7 | NC_005264.1 | + | 127834 | 0.67 | 0.925768 |
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Target: 5'- --cGUUGCCUCCGCGgcggCcgGCGGucuagaacccggcGCGCGa -3' miRNA: 3'- ccuCAACGGAGGUGCa---G--UGCC-------------UGUGC- -5' |
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| 24344 | 5' | -54.7 | NC_005264.1 | + | 146430 | 0.67 | 0.941137 |
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Target: 5'- cGAGcggcccUUGCCUCCccgagugccaauGCGcCACGGGCAUc -3' miRNA: 3'- cCUC------AACGGAGG------------UGCaGUGCCUGUGc -5' |
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| 24344 | 5' | -54.7 | NC_005264.1 | + | 146628 | 0.67 | 0.936425 |
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Target: 5'- aGGGGUcGUCUCCGCGUguCGuGAUAg- -3' miRNA: 3'- -CCUCAaCGGAGGUGCAguGC-CUGUgc -5' |
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| 24344 | 5' | -54.7 | NC_005264.1 | + | 150898 | 0.69 | 0.861861 |
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Target: 5'- uGGAGUcgcuUGCCUCCAUcuaCcCGGACAUa -3' miRNA: 3'- -CCUCA----ACGGAGGUGca-GuGCCUGUGc -5' |
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| 24344 | 5' | -54.7 | NC_005264.1 | + | 152225 | 0.66 | 0.953498 |
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Target: 5'- uGGGGcacuuaaUGCCUCgCGCGauauggaUCGCGGuCGCGg -3' miRNA: 3'- -CCUCa------ACGGAG-GUGC-------AGUGCCuGUGC- -5' |
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| 24344 | 5' | -54.7 | NC_005264.1 | + | 152727 | 1.12 | 0.003211 |
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Target: 5'- gGGAGUUGCCUCCACGUCACGGACACGg -3' miRNA: 3'- -CCUCAACGGAGGUGCAGUGCCUGUGC- -5' |
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| 24344 | 5' | -54.7 | NC_005264.1 | + | 153407 | 0.66 | 0.963977 |
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Target: 5'- aGGAGUUcuuCCUCCACGUguacucucgcuaAUGGGgGCGg -3' miRNA: 3'- -CCUCAAc--GGAGGUGCAg-----------UGCCUgUGC- -5' |
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| 24344 | 5' | -54.7 | NC_005264.1 | + | 157632 | 0.66 | 0.95389 |
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Target: 5'- aGAGcUUcGCCUcgCCGCGgCGCGaGACACGa -3' miRNA: 3'- cCUC-AA-CGGA--GGUGCaGUGC-CUGUGC- -5' |
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| 24344 | 5' | -54.7 | NC_005264.1 | + | 159016 | 0.67 | 0.926299 |
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Target: 5'- aGGAGcagGUCUCCGCGcgCAgGGAgCACc -3' miRNA: 3'- -CCUCaa-CGGAGGUGCa-GUgCCU-GUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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