miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24345 3' -57.7 NC_005264.1 + 149126 1.06 0.00247
Target:  5'- aUUUCUCCCAAGCCGCACGAGCUGCCAg -3'
miRNA:   3'- -AAAGAGGGUUCGGCGUGCUCGACGGU- -5'
24345 3' -57.7 NC_005264.1 + 29106 0.76 0.282526
Target:  5'- --gCUCCCAGcGCCGCAaGGGCUGUCGu -3'
miRNA:   3'- aaaGAGGGUU-CGGCGUgCUCGACGGU- -5'
24345 3' -57.7 NC_005264.1 + 78706 0.74 0.379848
Target:  5'- --cUUCCCGGGgCuCGCGAGCUGCCGc -3'
miRNA:   3'- aaaGAGGGUUCgGcGUGCUCGACGGU- -5'
24345 3' -57.7 NC_005264.1 + 42300 0.72 0.440795
Target:  5'- --cUUCCgGGGCCGuCGCaGGGCUGCCGg -3'
miRNA:   3'- aaaGAGGgUUCGGC-GUG-CUCGACGGU- -5'
24345 3' -57.7 NC_005264.1 + 106242 0.72 0.468562
Target:  5'- ---aUCCCAgaugGGCCGCGCGuAGC-GCCAg -3'
miRNA:   3'- aaagAGGGU----UCGGCGUGC-UCGaCGGU- -5'
24345 3' -57.7 NC_005264.1 + 89363 0.7 0.575895
Target:  5'- -aUCUCCCGGGCCuuccugacggcaaGCGCcGGCUagGCCAa -3'
miRNA:   3'- aaAGAGGGUUCGG-------------CGUGcUCGA--CGGU- -5'
24345 3' -57.7 NC_005264.1 + 36227 0.7 0.566745
Target:  5'- -gUUUUCUggGCUGgACGAuGCUGCCAa -3'
miRNA:   3'- aaAGAGGGuuCGGCgUGCU-CGACGGU- -5'
24345 3' -57.7 NC_005264.1 + 146501 0.7 0.556624
Target:  5'- -gUCUCCCuGGGCCGCGCG-GUU-CCAg -3'
miRNA:   3'- aaAGAGGG-UUCGGCGUGCuCGAcGGU- -5'
24345 3' -57.7 NC_005264.1 + 101485 0.69 0.638513
Target:  5'- ----cCCCAAGCaucacgaGCAUGAGgUGCCAa -3'
miRNA:   3'- aaagaGGGUUCGg------CGUGCUCgACGGU- -5'
24345 3' -57.7 NC_005264.1 + 46578 0.69 0.638513
Target:  5'- --gCUUCCAAGUCGCGCGuGCggagGCUc -3'
miRNA:   3'- aaaGAGGGUUCGGCGUGCuCGa---CGGu -5'
24345 3' -57.7 NC_005264.1 + 26149 0.69 0.647778
Target:  5'- -aUgUCCCAGGCCGCGgCGAGgacuuucgcggcaCUGUCGg -3'
miRNA:   3'- aaAgAGGGUUCGGCGU-GCUC-------------GACGGU- -5'
24345 3' -57.7 NC_005264.1 + 136716 0.69 0.628213
Target:  5'- aUUCUCUCGgcccgcgccacgAGCCGCGCG-GUgGCCAg -3'
miRNA:   3'- aAAGAGGGU------------UCGGCGUGCuCGaCGGU- -5'
24345 3' -57.7 NC_005264.1 + 106604 0.68 0.70999
Target:  5'- --cCUCgaCAaaAGCCGCGCGAcGCUcGCCAg -3'
miRNA:   3'- aaaGAGg-GU--UCGGCGUGCU-CGA-CGGU- -5'
24345 3' -57.7 NC_005264.1 + 159905 0.68 0.669348
Target:  5'- gUUUCUCa-AAGCaCGCugGAGCUcgcaGCCAa -3'
miRNA:   3'- -AAAGAGggUUCG-GCGugCUCGA----CGGU- -5'
24345 3' -57.7 NC_005264.1 + 111835 0.68 0.679577
Target:  5'- gUUCUCCgCGAGuaucuuCCGCACc-GCUGCCGg -3'
miRNA:   3'- aAAGAGG-GUUC------GGCGUGcuCGACGGU- -5'
24345 3' -57.7 NC_005264.1 + 53194 0.68 0.720006
Target:  5'- -gUCUCCgGGGCCGC--GAGUUGCa- -3'
miRNA:   3'- aaAGAGGgUUCGGCGugCUCGACGgu -5'
24345 3' -57.7 NC_005264.1 + 141982 0.67 0.768754
Target:  5'- cUUUCUCCUuuuAGUCGCGC-AGC-GCCGu -3'
miRNA:   3'- -AAAGAGGGu--UCGGCGUGcUCGaCGGU- -5'
24345 3' -57.7 NC_005264.1 + 4066 0.67 0.729946
Target:  5'- -aUCUCCCGAcagcggggcuGuuGCACGGGCgGCg- -3'
miRNA:   3'- aaAGAGGGUU----------CggCGUGCUCGaCGgu -5'
24345 3' -57.7 NC_005264.1 + 60236 0.67 0.772536
Target:  5'- -aUUUCCCAgAGCgCGCcauguaugcggucacGCGAGCUGCg- -3'
miRNA:   3'- aaAGAGGGU-UCG-GCG---------------UGCUCGACGgu -5'
24345 3' -57.7 NC_005264.1 + 130948 0.67 0.7398
Target:  5'- aUUUUCCCAcggucGCCGCugGGGUgaaaguccacuUGCCu -3'
miRNA:   3'- aAAGAGGGUu----CGGCGugCUCG-----------ACGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.