Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24345 | 3' | -57.7 | NC_005264.1 | + | 46578 | 0.69 | 0.638513 |
Target: 5'- --gCUUCCAAGUCGCGCGuGCggagGCUc -3' miRNA: 3'- aaaGAGGGUUCGGCGUGCuCGa---CGGu -5' |
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24345 | 3' | -57.7 | NC_005264.1 | + | 101485 | 0.69 | 0.638513 |
Target: 5'- ----cCCCAAGCaucacgaGCAUGAGgUGCCAa -3' miRNA: 3'- aaagaGGGUUCGg------CGUGCUCgACGGU- -5' |
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24345 | 3' | -57.7 | NC_005264.1 | + | 136716 | 0.69 | 0.628213 |
Target: 5'- aUUCUCUCGgcccgcgccacgAGCCGCGCG-GUgGCCAg -3' miRNA: 3'- aAAGAGGGU------------UCGGCGUGCuCGaCGGU- -5' |
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24345 | 3' | -57.7 | NC_005264.1 | + | 89363 | 0.7 | 0.575895 |
Target: 5'- -aUCUCCCGGGCCuuccugacggcaaGCGCcGGCUagGCCAa -3' miRNA: 3'- aaAGAGGGUUCGG-------------CGUGcUCGA--CGGU- -5' |
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24345 | 3' | -57.7 | NC_005264.1 | + | 36227 | 0.7 | 0.566745 |
Target: 5'- -gUUUUCUggGCUGgACGAuGCUGCCAa -3' miRNA: 3'- aaAGAGGGuuCGGCgUGCU-CGACGGU- -5' |
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24345 | 3' | -57.7 | NC_005264.1 | + | 146501 | 0.7 | 0.556624 |
Target: 5'- -gUCUCCCuGGGCCGCGCG-GUU-CCAg -3' miRNA: 3'- aaAGAGGG-UUCGGCGUGCuCGAcGGU- -5' |
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24345 | 3' | -57.7 | NC_005264.1 | + | 106242 | 0.72 | 0.468562 |
Target: 5'- ---aUCCCAgaugGGCCGCGCGuAGC-GCCAg -3' miRNA: 3'- aaagAGGGU----UCGGCGUGC-UCGaCGGU- -5' |
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24345 | 3' | -57.7 | NC_005264.1 | + | 42300 | 0.72 | 0.440795 |
Target: 5'- --cUUCCgGGGCCGuCGCaGGGCUGCCGg -3' miRNA: 3'- aaaGAGGgUUCGGC-GUG-CUCGACGGU- -5' |
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24345 | 3' | -57.7 | NC_005264.1 | + | 78706 | 0.74 | 0.379848 |
Target: 5'- --cUUCCCGGGgCuCGCGAGCUGCCGc -3' miRNA: 3'- aaaGAGGGUUCgGcGUGCUCGACGGU- -5' |
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24345 | 3' | -57.7 | NC_005264.1 | + | 29106 | 0.76 | 0.282526 |
Target: 5'- --gCUCCCAGcGCCGCAaGGGCUGUCGu -3' miRNA: 3'- aaaGAGGGUU-CGGCGUgCUCGACGGU- -5' |
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24345 | 3' | -57.7 | NC_005264.1 | + | 149126 | 1.06 | 0.00247 |
Target: 5'- aUUUCUCCCAAGCCGCACGAGCUGCCAg -3' miRNA: 3'- -AAAGAGGGUUCGGCGUGCUCGACGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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