Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24345 | 3' | -57.7 | NC_005264.1 | + | 29106 | 0.76 | 0.282526 |
Target: 5'- --gCUCCCAGcGCCGCAaGGGCUGUCGu -3' miRNA: 3'- aaaGAGGGUU-CGGCGUgCUCGACGGU- -5' |
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24345 | 3' | -57.7 | NC_005264.1 | + | 106604 | 0.68 | 0.70999 |
Target: 5'- --cCUCgaCAaaAGCCGCGCGAcGCUcGCCAg -3' miRNA: 3'- aaaGAGg-GU--UCGGCGUGCU-CGA-CGGU- -5' |
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24345 | 3' | -57.7 | NC_005264.1 | + | 4066 | 0.67 | 0.729946 |
Target: 5'- -aUCUCCCGAcagcggggcuGuuGCACGGGCgGCg- -3' miRNA: 3'- aaAGAGGGUU----------CggCGUGCUCGaCGgu -5' |
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24345 | 3' | -57.7 | NC_005264.1 | + | 11922 | 0.67 | 0.7398 |
Target: 5'- aUUUUCCCAcggucGCCGCugGGGUgaaaguccacuUGCCu -3' miRNA: 3'- aAAGAGGGUu----CGGCGugCUCG-----------ACGGu -5' |
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24345 | 3' | -57.7 | NC_005264.1 | + | 141982 | 0.67 | 0.768754 |
Target: 5'- cUUUCUCCUuuuAGUCGCGC-AGC-GCCGu -3' miRNA: 3'- -AAAGAGGGu--UCGGCGUGcUCGaCGGU- -5' |
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24345 | 3' | -57.7 | NC_005264.1 | + | 70989 | 0.66 | 0.796599 |
Target: 5'- -gUCgCCC-GGUCGCAgGGGCUGCg- -3' miRNA: 3'- aaAGaGGGuUCGGCGUgCUCGACGgu -5' |
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24345 | 3' | -57.7 | NC_005264.1 | + | 115190 | 0.66 | 0.802911 |
Target: 5'- aUUCUCaCUccgcgacauccgcgAAGCCGCACGAGUauacuuuuaUGUCAu -3' miRNA: 3'- aAAGAG-GG--------------UUCGGCGUGCUCG---------ACGGU- -5' |
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24345 | 3' | -57.7 | NC_005264.1 | + | 94889 | 0.66 | 0.805592 |
Target: 5'- -cUUUCUCGAGCCGCA--GGC-GCCGg -3' miRNA: 3'- aaAGAGGGUUCGGCGUgcUCGaCGGU- -5' |
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24345 | 3' | -57.7 | NC_005264.1 | + | 60137 | 0.66 | 0.814426 |
Target: 5'- --gCUCUCcAGCUGgACGAGCaGCCu -3' miRNA: 3'- aaaGAGGGuUCGGCgUGCUCGaCGGu -5' |
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24345 | 3' | -57.7 | NC_005264.1 | + | 56695 | 0.66 | 0.823092 |
Target: 5'- gUUCgguaaggCUC--GCCGCGCGAcaaGCUGCCAu -3' miRNA: 3'- aAAGa------GGGuuCGGCGUGCU---CGACGGU- -5' |
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24345 | 3' | -57.7 | NC_005264.1 | + | 149126 | 1.06 | 0.00247 |
Target: 5'- aUUUCUCCCAAGCCGCACGAGCUGCCAg -3' miRNA: 3'- -AAAGAGGGUUCGGCGUGCUCGACGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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