miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24345 5' -54.5 NC_005264.1 + 152767 0.67 0.914441
Target:  5'- cGGCGGgagauuCCGcCGCGGCU-GCAg-- -3'
miRNA:   3'- -CCGCCaau---GGCuGUGCCGAaCGUguu -5'
24345 5' -54.5 NC_005264.1 + 75100 0.67 0.908392
Target:  5'- cGGCaGgcGCCGGCGcCGaGCUgggGCGCAGu -3'
miRNA:   3'- -CCGcCaaUGGCUGU-GC-CGAa--CGUGUU- -5'
24345 5' -54.5 NC_005264.1 + 116547 0.67 0.902101
Target:  5'- uGGgGGcUACgGAgGCGGCgucgaUGCGCAGc -3'
miRNA:   3'- -CCgCCaAUGgCUgUGCCGa----ACGUGUU- -5'
24345 5' -54.5 NC_005264.1 + 123488 0.67 0.902101
Target:  5'- uGCGGUgGCCG-CGCGGUUgcUGgGCGAu -3'
miRNA:   3'- cCGCCAaUGGCuGUGCCGA--ACgUGUU- -5'
24345 5' -54.5 NC_005264.1 + 120905 0.68 0.895571
Target:  5'- cGGCGGaaaaacuacGCCGA-GCGGCUuucUGCGCGGu -3'
miRNA:   3'- -CCGCCaa-------UGGCUgUGCCGA---ACGUGUU- -5'
24345 5' -54.5 NC_005264.1 + 73372 0.68 0.895571
Target:  5'- cGCGGUgcuuUUGGCGCGGCUcUGC-CAAg -3'
miRNA:   3'- cCGCCAau--GGCUGUGCCGA-ACGuGUU- -5'
24345 5' -54.5 NC_005264.1 + 125538 0.68 0.881806
Target:  5'- aGGCGGgUGuuGcUGCGGCUgcgGCGCAu -3'
miRNA:   3'- -CCGCCaAUggCuGUGCCGAa--CGUGUu -5'
24345 5' -54.5 NC_005264.1 + 87513 0.68 0.881806
Target:  5'- cGCuGUUACCGGCACuGGC--GCGCGg -3'
miRNA:   3'- cCGcCAAUGGCUGUG-CCGaaCGUGUu -5'
24345 5' -54.5 NC_005264.1 + 56437 0.68 0.874581
Target:  5'- cGCGGUgcuUGCCGACguagGCGGC--GUACAGa -3'
miRNA:   3'- cCGCCA---AUGGCUG----UGCCGaaCGUGUU- -5'
24345 5' -54.5 NC_005264.1 + 106516 0.68 0.859468
Target:  5'- aGGCGG-UGCgCGACgGCGGCa-GCGCGg -3'
miRNA:   3'- -CCGCCaAUG-GCUG-UGCCGaaCGUGUu -5'
24345 5' -54.5 NC_005264.1 + 155781 0.69 0.851593
Target:  5'- cGGCGccgGCCGGCGCcgucgccGCUUGCGCGc -3'
miRNA:   3'- -CCGCcaaUGGCUGUGc------CGAACGUGUu -5'
24345 5' -54.5 NC_005264.1 + 114200 0.69 0.851593
Target:  5'- aGCGGaauacccaACCGACGcCGGCUUGCcCAc -3'
miRNA:   3'- cCGCCaa------UGGCUGU-GCCGAACGuGUu -5'
24345 5' -54.5 NC_005264.1 + 99880 0.69 0.851593
Target:  5'- uGGCGGggaagucugACCccgaacaaaaGGCGCGGCUUGCGg-- -3'
miRNA:   3'- -CCGCCaa-------UGG----------CUGUGCCGAACGUguu -5'
24345 5' -54.5 NC_005264.1 + 131998 0.69 0.851593
Target:  5'- uGGCGGUggGCCGAC-CGGC--GC-CAGa -3'
miRNA:   3'- -CCGCCAa-UGGCUGuGCCGaaCGuGUU- -5'
24345 5' -54.5 NC_005264.1 + 36755 0.69 0.851593
Target:  5'- cGGCGccgGCCGGCGCcgucgccGCUUGCGCGc -3'
miRNA:   3'- -CCGCcaaUGGCUGUGc------CGAACGUGUu -5'
24345 5' -54.5 NC_005264.1 + 73819 0.69 0.843513
Target:  5'- aGGCGaGUgccCCGACAUGcGCgagcUGCGCGAu -3'
miRNA:   3'- -CCGC-CAau-GGCUGUGC-CGa---ACGUGUU- -5'
24345 5' -54.5 NC_005264.1 + 47925 0.69 0.835236
Target:  5'- cGCGGagccUUAUCGACggagaACGGCUcgGCACGAg -3'
miRNA:   3'- cCGCC----AAUGGCUG-----UGCCGAa-CGUGUU- -5'
24345 5' -54.5 NC_005264.1 + 34798 0.69 0.82677
Target:  5'- gGGCGGccAUCGACGCGGUa-GCGCu- -3'
miRNA:   3'- -CCGCCaaUGGCUGUGCCGaaCGUGuu -5'
24345 5' -54.5 NC_005264.1 + 123980 0.7 0.807517
Target:  5'- uGGCGGUgacgcgucaccgACuCGGCACGGUgcccGCGCAu -3'
miRNA:   3'- -CCGCCAa-----------UG-GCUGUGCCGaa--CGUGUu -5'
24345 5' -54.5 NC_005264.1 + 17881 0.7 0.791173
Target:  5'- cGGCGG--GCUGAUcuACGGCgcGCACAGc -3'
miRNA:   3'- -CCGCCaaUGGCUG--UGCCGaaCGUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.