miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24345 5' -54.5 NC_005264.1 + 67003 0.66 0.945604
Target:  5'- cGGCGaGUgcUGCCugGACggagcgGCGGCcUUGCGCAGg -3'
miRNA:   3'- -CCGC-CA--AUGG--CUG------UGCCG-AACGUGUU- -5'
24345 5' -54.5 NC_005264.1 + 68154 0.67 0.920247
Target:  5'- aGGCGGUucgugcaacaucUGCau-CACGGCggGCACGu -3'
miRNA:   3'- -CCGCCA------------AUGgcuGUGCCGaaCGUGUu -5'
24345 5' -54.5 NC_005264.1 + 69782 0.71 0.723585
Target:  5'- gGGCGGagGCCG-CAUGGCa-GCGCAGc -3'
miRNA:   3'- -CCGCCaaUGGCuGUGCCGaaCGUGUU- -5'
24345 5' -54.5 NC_005264.1 + 73372 0.68 0.895571
Target:  5'- cGCGGUgcuuUUGGCGCGGCUcUGC-CAAg -3'
miRNA:   3'- cCGCCAau--GGCUGUGCCGA-ACGuGUU- -5'
24345 5' -54.5 NC_005264.1 + 73710 0.66 0.949947
Target:  5'- uGGCGccagUACCGA--CGGCcUUGCGCGGg -3'
miRNA:   3'- -CCGCca--AUGGCUguGCCG-AACGUGUU- -5'
24345 5' -54.5 NC_005264.1 + 73819 0.69 0.843513
Target:  5'- aGGCGaGUgccCCGACAUGcGCgagcUGCGCGAu -3'
miRNA:   3'- -CCGC-CAau-GGCUGUGC-CGa---ACGUGUU- -5'
24345 5' -54.5 NC_005264.1 + 75064 0.66 0.94102
Target:  5'- cGGCGGaguaGCUGACGCGGagagGCAgGGu -3'
miRNA:   3'- -CCGCCaa--UGGCUGUGCCgaa-CGUgUU- -5'
24345 5' -54.5 NC_005264.1 + 75100 0.67 0.908392
Target:  5'- cGGCaGgcGCCGGCGcCGaGCUgggGCGCAGu -3'
miRNA:   3'- -CCGcCaaUGGCUGU-GC-CGAa--CGUGUU- -5'
24345 5' -54.5 NC_005264.1 + 76141 0.67 0.920247
Target:  5'- cGGCGGcaaagACCGcGCGCGGCgaGUaACGAa -3'
miRNA:   3'- -CCGCCaa---UGGC-UGUGCCGaaCG-UGUU- -5'
24345 5' -54.5 NC_005264.1 + 87242 0.74 0.589933
Target:  5'- aGGCauGGagGCCGACuACGGCU-GCGCAAa -3'
miRNA:   3'- -CCG--CCaaUGGCUG-UGCCGAaCGUGUU- -5'
24345 5' -54.5 NC_005264.1 + 87513 0.68 0.881806
Target:  5'- cGCuGUUACCGGCACuGGC--GCGCGg -3'
miRNA:   3'- cCGcCAAUGGCUGUG-CCGaaCGUGUu -5'
24345 5' -54.5 NC_005264.1 + 88110 0.66 0.949947
Target:  5'- aGCGucgGCCGGCGCGGUUgcGUACGGg -3'
miRNA:   3'- cCGCcaaUGGCUGUGCCGAa-CGUGUU- -5'
24345 5' -54.5 NC_005264.1 + 98458 0.67 0.915032
Target:  5'- cGGCGGgauuugucaacccgGCCGGCACGcGCgaggGCAUc- -3'
miRNA:   3'- -CCGCCaa------------UGGCUGUGC-CGaa--CGUGuu -5'
24345 5' -54.5 NC_005264.1 + 99880 0.69 0.851593
Target:  5'- uGGCGGggaagucugACCccgaacaaaaGGCGCGGCUUGCGg-- -3'
miRNA:   3'- -CCGCCaa-------UGG----------CUGUGCCGAACGUguu -5'
24345 5' -54.5 NC_005264.1 + 103130 0.8 0.296534
Target:  5'- cGCGGUagccGCCGGCGCGGCgcgcgGCGCAAa -3'
miRNA:   3'- cCGCCAa---UGGCUGUGCCGaa---CGUGUU- -5'
24345 5' -54.5 NC_005264.1 + 103810 0.74 0.589933
Target:  5'- cGGCGGg-ACCG-CGgGGCUUGCGCu- -3'
miRNA:   3'- -CCGCCaaUGGCuGUgCCGAACGUGuu -5'
24345 5' -54.5 NC_005264.1 + 106516 0.68 0.859468
Target:  5'- aGGCGG-UGCgCGACgGCGGCa-GCGCGg -3'
miRNA:   3'- -CCGCCaAUG-GCUG-UGCCGaaCGUGUu -5'
24345 5' -54.5 NC_005264.1 + 109940 0.74 0.579649
Target:  5'- uGGCGGUUcGCCGACcuuACGGCccUGCugAu -3'
miRNA:   3'- -CCGCCAA-UGGCUG---UGCCGa-ACGugUu -5'
24345 5' -54.5 NC_005264.1 + 114200 0.69 0.851593
Target:  5'- aGCGGaauacccaACCGACGcCGGCUUGCcCAc -3'
miRNA:   3'- cCGCCaa------UGGCUGU-GCCGAACGuGUu -5'
24345 5' -54.5 NC_005264.1 + 116547 0.67 0.902101
Target:  5'- uGGgGGcUACgGAgGCGGCgucgaUGCGCAGc -3'
miRNA:   3'- -CCgCCaAUGgCUgUGCCGa----ACGUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.