miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24345 5' -54.5 NC_005264.1 + 385 0.67 0.914441
Target:  5'- uGGgGGgcagcGCCGGCGCGGUcgUGUACc- -3'
miRNA:   3'- -CCgCCaa---UGGCUGUGCCGa-ACGUGuu -5'
24345 5' -54.5 NC_005264.1 + 764 0.67 0.914441
Target:  5'- cGGCGGagccccUACgCGACACGGUucUUGCGg-- -3'
miRNA:   3'- -CCGCCa-----AUG-GCUGUGCCG--AACGUguu -5'
24345 5' -54.5 NC_005264.1 + 16568 0.74 0.569403
Target:  5'- gGGCGGc-GCCGGgGCGGCggcGCACAu -3'
miRNA:   3'- -CCGCCaaUGGCUgUGCCGaa-CGUGUu -5'
24345 5' -54.5 NC_005264.1 + 17881 0.7 0.791173
Target:  5'- cGGCGG--GCUGAUcuACGGCgcGCACAGc -3'
miRNA:   3'- -CCGCCaaUGGCUG--UGCCGaaCGUGUU- -5'
24345 5' -54.5 NC_005264.1 + 24058 0.66 0.949947
Target:  5'- uGGCGGacacaGCCaacaGCACGGCcagGCGCAu -3'
miRNA:   3'- -CCGCCaa---UGGc---UGUGCCGaa-CGUGUu -5'
24345 5' -54.5 NC_005264.1 + 33078 0.66 0.945604
Target:  5'- cGCGGUgcCCGGgGCGGauuucgUGCAUAu -3'
miRNA:   3'- cCGCCAauGGCUgUGCCga----ACGUGUu -5'
24345 5' -54.5 NC_005264.1 + 34336 0.72 0.693217
Target:  5'- cGGCGGUgaugUGCCuguuccaguauGACGCGGCcaaGCGCGAa -3'
miRNA:   3'- -CCGCCA----AUGG-----------CUGUGCCGaa-CGUGUU- -5'
24345 5' -54.5 NC_005264.1 + 34798 0.69 0.82677
Target:  5'- gGGCGGccAUCGACGCGGUa-GCGCu- -3'
miRNA:   3'- -CCGCCaaUGGCUGUGCCGaaCGUGuu -5'
24345 5' -54.5 NC_005264.1 + 35807 0.72 0.703404
Target:  5'- uGGCGGgcgccucUGCCGGCcccgcaaugGCGGCccgUGCACGGa -3'
miRNA:   3'- -CCGCCa------AUGGCUG---------UGCCGa--ACGUGUU- -5'
24345 5' -54.5 NC_005264.1 + 36755 0.69 0.851593
Target:  5'- cGGCGccgGCCGGCGCcgucgccGCUUGCGCGc -3'
miRNA:   3'- -CCGCcaaUGGCUGUGc------CGAACGUGUu -5'
24345 5' -54.5 NC_005264.1 + 37661 0.72 0.672694
Target:  5'- aGGCuucGGUUGCCGGCAuCGGCgcccCACAAg -3'
miRNA:   3'- -CCG---CCAAUGGCUGU-GCCGaac-GUGUU- -5'
24345 5' -54.5 NC_005264.1 + 39846 0.72 0.682977
Target:  5'- uGGCGGUaaagccgGCCGGCGCGGCcaGgACGu -3'
miRNA:   3'- -CCGCCAa------UGGCUGUGCCGaaCgUGUu -5'
24345 5' -54.5 NC_005264.1 + 47925 0.69 0.835236
Target:  5'- cGCGGagccUUAUCGACggagaACGGCUcgGCACGAg -3'
miRNA:   3'- cCGCC----AAUGGCUG-----UGCCGAa-CGUGUU- -5'
24345 5' -54.5 NC_005264.1 + 51851 0.66 0.931123
Target:  5'- cGCGGgcgucACCGACucuuCGGCgagGCugGAa -3'
miRNA:   3'- cCGCCaa---UGGCUGu---GCCGaa-CGugUU- -5'
24345 5' -54.5 NC_005264.1 + 52565 0.72 0.682977
Target:  5'- gGGCGGUgcggaUGGCACGGCUgccuacGCGCGc -3'
miRNA:   3'- -CCGCCAaug--GCUGUGCCGAa-----CGUGUu -5'
24345 5' -54.5 NC_005264.1 + 53572 0.66 0.936194
Target:  5'- cGCGcagAgCGGCGCGGCUUGCGu-- -3'
miRNA:   3'- cCGCcaaUgGCUGUGCCGAACGUguu -5'
24345 5' -54.5 NC_005264.1 + 56437 0.68 0.874581
Target:  5'- cGCGGUgcuUGCCGACguagGCGGC--GUACAGa -3'
miRNA:   3'- cCGCCA---AUGGCUG----UGCCGaaCGUGUU- -5'
24345 5' -54.5 NC_005264.1 + 60899 0.66 0.949947
Target:  5'- cGCGGUgggGCCGACGCcgccaGUUUcGCGCGc -3'
miRNA:   3'- cCGCCAa--UGGCUGUGc----CGAA-CGUGUu -5'
24345 5' -54.5 NC_005264.1 + 61590 0.66 0.936194
Target:  5'- uGGaacaGcUUGCCGGcCACGGUcUGCACAAa -3'
miRNA:   3'- -CCg---CcAAUGGCU-GUGCCGaACGUGUU- -5'
24345 5' -54.5 NC_005264.1 + 64285 0.66 0.931123
Target:  5'- cGCGGgUGCCGAguauCGCGGCccacaGCGCGu -3'
miRNA:   3'- cCGCCaAUGGCU----GUGCCGaa---CGUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.