miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24345 5' -54.5 NC_005264.1 + 158872 0.72 0.682977
Target:  5'- uGGCGGUaaagccgGCCGGCGCGGCcaGgACGu -3'
miRNA:   3'- -CCGCCAa------UGGCUGUGCCGaaCgUGUu -5'
24345 5' -54.5 NC_005264.1 + 155781 0.69 0.851593
Target:  5'- cGGCGccgGCCGGCGCcgucgccGCUUGCGCGc -3'
miRNA:   3'- -CCGCcaaUGGCUGUGc------CGAACGUGUu -5'
24345 5' -54.5 NC_005264.1 + 154833 0.72 0.703404
Target:  5'- uGGCGGgcgccucUGCCGGCcccgcaaugGCGGCccgUGCACGGa -3'
miRNA:   3'- -CCGCCa------AUGGCUG---------UGCCGa--ACGUGUU- -5'
24345 5' -54.5 NC_005264.1 + 152767 0.67 0.914441
Target:  5'- cGGCGGgagauuCCGcCGCGGCU-GCAg-- -3'
miRNA:   3'- -CCGCCaau---GGCuGUGCCGAaCGUguu -5'
24345 5' -54.5 NC_005264.1 + 149168 1.08 0.004326
Target:  5'- uGGCGGUUACCGACACGGCUUGCACAAa -3'
miRNA:   3'- -CCGCCAAUGGCUGUGCCGAACGUGUU- -5'
24345 5' -54.5 NC_005264.1 + 146417 0.7 0.772457
Target:  5'- gGGCGGgUGCUGAuggcucgaugcCGCGGCUcugacuUGCGCAc -3'
miRNA:   3'- -CCGCCaAUGGCU-----------GUGCCGA------ACGUGUu -5'
24345 5' -54.5 NC_005264.1 + 141468 0.66 0.934698
Target:  5'- cGGCGGggccucuuuccaccgGCCGAgGCGGCccgGgACGAa -3'
miRNA:   3'- -CCGCCaa-------------UGGCUgUGCCGaa-CgUGUU- -5'
24345 5' -54.5 NC_005264.1 + 139931 0.66 0.945604
Target:  5'- uGCGGgaauacgACCGACGCGGUgcugcuaucgUGCcCGAa -3'
miRNA:   3'- cCGCCaa-----UGGCUGUGCCGa---------ACGuGUU- -5'
24345 5' -54.5 NC_005264.1 + 136241 0.66 0.949947
Target:  5'- aGGUGGcgACgGACACGGCUcaugGguUAGc -3'
miRNA:   3'- -CCGCCaaUGgCUGUGCCGAa---CguGUU- -5'
24345 5' -54.5 NC_005264.1 + 131998 0.69 0.851593
Target:  5'- uGGCGGUggGCCGAC-CGGC--GC-CAGa -3'
miRNA:   3'- -CCGCCAa-UGGCUGuGCCGaaCGuGUU- -5'
24345 5' -54.5 NC_005264.1 + 125538 0.68 0.881806
Target:  5'- aGGCGGgUGuuGcUGCGGCUgcgGCGCAu -3'
miRNA:   3'- -CCGCCaAUggCuGUGCCGAa--CGUGUu -5'
24345 5' -54.5 NC_005264.1 + 123980 0.7 0.807517
Target:  5'- uGGCGGUgacgcgucaccgACuCGGCACGGUgcccGCGCAu -3'
miRNA:   3'- -CCGCCAa-----------UG-GCUGUGCCGaa--CGUGUu -5'
24345 5' -54.5 NC_005264.1 + 123488 0.67 0.902101
Target:  5'- uGCGGUgGCCG-CGCGGUUgcUGgGCGAu -3'
miRNA:   3'- cCGCCAaUGGCuGUGCCGA--ACgUGUU- -5'
24345 5' -54.5 NC_005264.1 + 120905 0.68 0.895571
Target:  5'- cGGCGGaaaaacuacGCCGA-GCGGCUuucUGCGCGGu -3'
miRNA:   3'- -CCGCCaa-------UGGCUgUGCCGA---ACGUGUU- -5'
24345 5' -54.5 NC_005264.1 + 118669 0.66 0.931123
Target:  5'- aGGuCGGUUACaagguuaGAUACGcGCUcGCGCGg -3'
miRNA:   3'- -CC-GCCAAUGg------CUGUGC-CGAaCGUGUu -5'
24345 5' -54.5 NC_005264.1 + 116547 0.67 0.902101
Target:  5'- uGGgGGcUACgGAgGCGGCgucgaUGCGCAGc -3'
miRNA:   3'- -CCgCCaAUGgCUgUGCCGa----ACGUGUU- -5'
24345 5' -54.5 NC_005264.1 + 114200 0.69 0.851593
Target:  5'- aGCGGaauacccaACCGACGcCGGCUUGCcCAc -3'
miRNA:   3'- cCGCCaa------UGGCUGU-GCCGAACGuGUu -5'
24345 5' -54.5 NC_005264.1 + 109940 0.74 0.579649
Target:  5'- uGGCGGUUcGCCGACcuuACGGCccUGCugAu -3'
miRNA:   3'- -CCGCCAA-UGGCUG---UGCCGa-ACGugUu -5'
24345 5' -54.5 NC_005264.1 + 106516 0.68 0.859468
Target:  5'- aGGCGG-UGCgCGACgGCGGCa-GCGCGg -3'
miRNA:   3'- -CCGCCaAUG-GCUG-UGCCGaaCGUGUu -5'
24345 5' -54.5 NC_005264.1 + 103810 0.74 0.589933
Target:  5'- cGGCGGg-ACCG-CGgGGCUUGCGCu- -3'
miRNA:   3'- -CCGCCaaUGGCuGUgCCGAACGUGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.