miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24345 5' -54.5 NC_005264.1 + 149168 1.08 0.004326
Target:  5'- uGGCGGUUACCGACACGGCUUGCACAAa -3'
miRNA:   3'- -CCGCCAAUGGCUGUGCCGAACGUGUU- -5'
24345 5' -54.5 NC_005264.1 + 103130 0.8 0.296534
Target:  5'- cGCGGUagccGCCGGCGCGGCgcgcgGCGCAAa -3'
miRNA:   3'- cCGCCAa---UGGCUGUGCCGaa---CGUGUU- -5'
24345 5' -54.5 NC_005264.1 + 16568 0.74 0.569403
Target:  5'- gGGCGGc-GCCGGgGCGGCggcGCACAu -3'
miRNA:   3'- -CCGCCaaUGGCUgUGCCGaa-CGUGUu -5'
24345 5' -54.5 NC_005264.1 + 109940 0.74 0.579649
Target:  5'- uGGCGGUUcGCCGACcuuACGGCccUGCugAu -3'
miRNA:   3'- -CCGCCAA-UGGCUG---UGCCGa-ACGugUu -5'
24345 5' -54.5 NC_005264.1 + 103810 0.74 0.589933
Target:  5'- cGGCGGg-ACCG-CGgGGCUUGCGCu- -3'
miRNA:   3'- -CCGCCaaUGGCuGUgCCGAACGUGuu -5'
24345 5' -54.5 NC_005264.1 + 87242 0.74 0.589933
Target:  5'- aGGCauGGagGCCGACuACGGCU-GCGCAAa -3'
miRNA:   3'- -CCG--CCaaUGGCUG-UGCCGAaCGUGUU- -5'
24345 5' -54.5 NC_005264.1 + 37661 0.72 0.672694
Target:  5'- aGGCuucGGUUGCCGGCAuCGGCgcccCACAAg -3'
miRNA:   3'- -CCG---CCAAUGGCUGU-GCCGaac-GUGUU- -5'
24345 5' -54.5 NC_005264.1 + 52565 0.72 0.682977
Target:  5'- gGGCGGUgcggaUGGCACGGCUgccuacGCGCGc -3'
miRNA:   3'- -CCGCCAaug--GCUGUGCCGAa-----CGUGUu -5'
24345 5' -54.5 NC_005264.1 + 39846 0.72 0.682977
Target:  5'- uGGCGGUaaagccgGCCGGCGCGGCcaGgACGu -3'
miRNA:   3'- -CCGCCAa------UGGCUGUGCCGaaCgUGUu -5'
24345 5' -54.5 NC_005264.1 + 158872 0.72 0.682977
Target:  5'- uGGCGGUaaagccgGCCGGCGCGGCcaGgACGu -3'
miRNA:   3'- -CCGCCAa------UGGCUGUGCCGaaCgUGUu -5'
24345 5' -54.5 NC_005264.1 + 34336 0.72 0.693217
Target:  5'- cGGCGGUgaugUGCCuguuccaguauGACGCGGCcaaGCGCGAa -3'
miRNA:   3'- -CCGCCA----AUGG-----------CUGUGCCGaa-CGUGUU- -5'
24345 5' -54.5 NC_005264.1 + 154833 0.72 0.703404
Target:  5'- uGGCGGgcgccucUGCCGGCcccgcaaugGCGGCccgUGCACGGa -3'
miRNA:   3'- -CCGCCa------AUGGCUG---------UGCCGa--ACGUGUU- -5'
24345 5' -54.5 NC_005264.1 + 35807 0.72 0.703404
Target:  5'- uGGCGGgcgccucUGCCGGCcccgcaaugGCGGCccgUGCACGGa -3'
miRNA:   3'- -CCGCCa------AUGGCUG---------UGCCGa--ACGUGUU- -5'
24345 5' -54.5 NC_005264.1 + 69782 0.71 0.723585
Target:  5'- gGGCGGagGCCG-CAUGGCa-GCGCAGc -3'
miRNA:   3'- -CCGCCaaUGGCuGUGCCGaaCGUGUU- -5'
24345 5' -54.5 NC_005264.1 + 146417 0.7 0.772457
Target:  5'- gGGCGGgUGCUGAuggcucgaugcCGCGGCUcugacuUGCGCAc -3'
miRNA:   3'- -CCGCCaAUGGCU-----------GUGCCGA------ACGUGUu -5'
24345 5' -54.5 NC_005264.1 + 17881 0.7 0.791173
Target:  5'- cGGCGG--GCUGAUcuACGGCgcGCACAGc -3'
miRNA:   3'- -CCGCCaaUGGCUG--UGCCGaaCGUGUU- -5'
24345 5' -54.5 NC_005264.1 + 123980 0.7 0.807517
Target:  5'- uGGCGGUgacgcgucaccgACuCGGCACGGUgcccGCGCAu -3'
miRNA:   3'- -CCGCCAa-----------UG-GCUGUGCCGaa--CGUGUu -5'
24345 5' -54.5 NC_005264.1 + 34798 0.69 0.82677
Target:  5'- gGGCGGccAUCGACGCGGUa-GCGCu- -3'
miRNA:   3'- -CCGCCaaUGGCUGUGCCGaaCGUGuu -5'
24345 5' -54.5 NC_005264.1 + 47925 0.69 0.835236
Target:  5'- cGCGGagccUUAUCGACggagaACGGCUcgGCACGAg -3'
miRNA:   3'- cCGCC----AAUGGCUG-----UGCCGAa-CGUGUU- -5'
24345 5' -54.5 NC_005264.1 + 73819 0.69 0.843513
Target:  5'- aGGCGaGUgccCCGACAUGcGCgagcUGCGCGAu -3'
miRNA:   3'- -CCGC-CAau-GGCUGUGC-CGa---ACGUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.