miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24345 5' -54.5 NC_005264.1 + 68154 0.67 0.920247
Target:  5'- aGGCGGUucgugcaacaucUGCau-CACGGCggGCACGu -3'
miRNA:   3'- -CCGCCA------------AUGgcuGUGCCGaaCGUGUu -5'
24345 5' -54.5 NC_005264.1 + 155781 0.69 0.851593
Target:  5'- cGGCGccgGCCGGCGCcgucgccGCUUGCGCGc -3'
miRNA:   3'- -CCGCcaaUGGCUGUGc------CGAACGUGUu -5'
24345 5' -54.5 NC_005264.1 + 87513 0.68 0.881806
Target:  5'- cGCuGUUACCGGCACuGGC--GCGCGg -3'
miRNA:   3'- cCGcCAAUGGCUGUG-CCGaaCGUGUu -5'
24345 5' -54.5 NC_005264.1 + 73372 0.68 0.895571
Target:  5'- cGCGGUgcuuUUGGCGCGGCUcUGC-CAAg -3'
miRNA:   3'- cCGCCAau--GGCUGUGCCGA-ACGuGUU- -5'
24345 5' -54.5 NC_005264.1 + 116547 0.67 0.902101
Target:  5'- uGGgGGcUACgGAgGCGGCgucgaUGCGCAGc -3'
miRNA:   3'- -CCgCCaAUGgCUgUGCCGa----ACGUGUU- -5'
24345 5' -54.5 NC_005264.1 + 75100 0.67 0.908392
Target:  5'- cGGCaGgcGCCGGCGcCGaGCUgggGCGCAGu -3'
miRNA:   3'- -CCGcCaaUGGCUGU-GC-CGAa--CGUGUU- -5'
24345 5' -54.5 NC_005264.1 + 385 0.67 0.914441
Target:  5'- uGGgGGgcagcGCCGGCGCGGUcgUGUACc- -3'
miRNA:   3'- -CCgCCaa---UGGCUGUGCCGa-ACGUGuu -5'
24345 5' -54.5 NC_005264.1 + 764 0.67 0.914441
Target:  5'- cGGCGGagccccUACgCGACACGGUucUUGCGg-- -3'
miRNA:   3'- -CCGCCa-----AUG-GCUGUGCCG--AACGUguu -5'
24345 5' -54.5 NC_005264.1 + 98458 0.67 0.915032
Target:  5'- cGGCGGgauuugucaacccgGCCGGCACGcGCgaggGCAUc- -3'
miRNA:   3'- -CCGCCaa------------UGGCUGUGC-CGaa--CGUGuu -5'
24345 5' -54.5 NC_005264.1 + 114200 0.69 0.851593
Target:  5'- aGCGGaauacccaACCGACGcCGGCUUGCcCAc -3'
miRNA:   3'- cCGCCaa------UGGCUGU-GCCGAACGuGUu -5'
24345 5' -54.5 NC_005264.1 + 73819 0.69 0.843513
Target:  5'- aGGCGaGUgccCCGACAUGcGCgagcUGCGCGAu -3'
miRNA:   3'- -CCGC-CAau-GGCUGUGC-CGa---ACGUGUU- -5'
24345 5' -54.5 NC_005264.1 + 47925 0.69 0.835236
Target:  5'- cGCGGagccUUAUCGACggagaACGGCUcgGCACGAg -3'
miRNA:   3'- cCGCC----AAUGGCUG-----UGCCGAa-CGUGUU- -5'
24345 5' -54.5 NC_005264.1 + 37661 0.72 0.672694
Target:  5'- aGGCuucGGUUGCCGGCAuCGGCgcccCACAAg -3'
miRNA:   3'- -CCG---CCAAUGGCUGU-GCCGaac-GUGUU- -5'
24345 5' -54.5 NC_005264.1 + 158872 0.72 0.682977
Target:  5'- uGGCGGUaaagccgGCCGGCGCGGCcaGgACGu -3'
miRNA:   3'- -CCGCCAa------UGGCUGUGCCGaaCgUGUu -5'
24345 5' -54.5 NC_005264.1 + 34336 0.72 0.693217
Target:  5'- cGGCGGUgaugUGCCuguuccaguauGACGCGGCcaaGCGCGAa -3'
miRNA:   3'- -CCGCCA----AUGG-----------CUGUGCCGaa-CGUGUU- -5'
24345 5' -54.5 NC_005264.1 + 154833 0.72 0.703404
Target:  5'- uGGCGGgcgccucUGCCGGCcccgcaaugGCGGCccgUGCACGGa -3'
miRNA:   3'- -CCGCCa------AUGGCUG---------UGCCGa--ACGUGUU- -5'
24345 5' -54.5 NC_005264.1 + 69782 0.71 0.723585
Target:  5'- gGGCGGagGCCG-CAUGGCa-GCGCAGc -3'
miRNA:   3'- -CCGCCaaUGGCuGUGCCGaaCGUGUU- -5'
24345 5' -54.5 NC_005264.1 + 146417 0.7 0.772457
Target:  5'- gGGCGGgUGCUGAuggcucgaugcCGCGGCUcugacuUGCGCAc -3'
miRNA:   3'- -CCGCCaAUGGCU-----------GUGCCGA------ACGUGUu -5'
24345 5' -54.5 NC_005264.1 + 123980 0.7 0.807517
Target:  5'- uGGCGGUgacgcgucaccgACuCGGCACGGUgcccGCGCAu -3'
miRNA:   3'- -CCGCCAa-----------UG-GCUGUGCCGaa--CGUGUu -5'
24345 5' -54.5 NC_005264.1 + 34798 0.69 0.82677
Target:  5'- gGGCGGccAUCGACGCGGUa-GCGCu- -3'
miRNA:   3'- -CCGCCaaUGGCUGUGCCGaaCGUGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.