Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24345 | 5' | -54.5 | NC_005264.1 | + | 73710 | 0.66 | 0.949947 |
Target: 5'- uGGCGccagUACCGA--CGGCcUUGCGCGGg -3' miRNA: 3'- -CCGCca--AUGGCUguGCCG-AACGUGUU- -5' |
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24345 | 5' | -54.5 | NC_005264.1 | + | 39846 | 0.72 | 0.682977 |
Target: 5'- uGGCGGUaaagccgGCCGGCGCGGCcaGgACGu -3' miRNA: 3'- -CCGCCAa------UGGCUGUGCCGaaCgUGUu -5' |
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24345 | 5' | -54.5 | NC_005264.1 | + | 87242 | 0.74 | 0.589933 |
Target: 5'- aGGCauGGagGCCGACuACGGCU-GCGCAAa -3' miRNA: 3'- -CCG--CCaaUGGCUG-UGCCGAaCGUGUU- -5' |
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24345 | 5' | -54.5 | NC_005264.1 | + | 149168 | 1.08 | 0.004326 |
Target: 5'- uGGCGGUUACCGACACGGCUUGCACAAa -3' miRNA: 3'- -CCGCCAAUGGCUGUGCCGAACGUGUU- -5' |
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24345 | 5' | -54.5 | NC_005264.1 | + | 51851 | 0.66 | 0.931123 |
Target: 5'- cGCGGgcgucACCGACucuuCGGCgagGCugGAa -3' miRNA: 3'- cCGCCaa---UGGCUGu---GCCGaa-CGugUU- -5' |
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24345 | 5' | -54.5 | NC_005264.1 | + | 152767 | 0.67 | 0.914441 |
Target: 5'- cGGCGGgagauuCCGcCGCGGCU-GCAg-- -3' miRNA: 3'- -CCGCCaau---GGCuGUGCCGAaCGUguu -5' |
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24345 | 5' | -54.5 | NC_005264.1 | + | 120905 | 0.68 | 0.895571 |
Target: 5'- cGGCGGaaaaacuacGCCGA-GCGGCUuucUGCGCGGu -3' miRNA: 3'- -CCGCCaa-------UGGCUgUGCCGA---ACGUGUU- -5' |
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24345 | 5' | -54.5 | NC_005264.1 | + | 125538 | 0.68 | 0.881806 |
Target: 5'- aGGCGGgUGuuGcUGCGGCUgcgGCGCAu -3' miRNA: 3'- -CCGCCaAUggCuGUGCCGAa--CGUGUu -5' |
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24345 | 5' | -54.5 | NC_005264.1 | + | 36755 | 0.69 | 0.851593 |
Target: 5'- cGGCGccgGCCGGCGCcgucgccGCUUGCGCGc -3' miRNA: 3'- -CCGCcaaUGGCUGUGc------CGAACGUGUu -5' |
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24345 | 5' | -54.5 | NC_005264.1 | + | 52565 | 0.72 | 0.682977 |
Target: 5'- gGGCGGUgcggaUGGCACGGCUgccuacGCGCGc -3' miRNA: 3'- -CCGCCAaug--GCUGUGCCGAa-----CGUGUu -5' |
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24345 | 5' | -54.5 | NC_005264.1 | + | 99880 | 0.69 | 0.851593 |
Target: 5'- uGGCGGggaagucugACCccgaacaaaaGGCGCGGCUUGCGg-- -3' miRNA: 3'- -CCGCCaa-------UGG----------CUGUGCCGAACGUguu -5' |
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24345 | 5' | -54.5 | NC_005264.1 | + | 106516 | 0.68 | 0.859468 |
Target: 5'- aGGCGG-UGCgCGACgGCGGCa-GCGCGg -3' miRNA: 3'- -CCGCCaAUG-GCUG-UGCCGaaCGUGUu -5' |
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24345 | 5' | -54.5 | NC_005264.1 | + | 139931 | 0.66 | 0.945604 |
Target: 5'- uGCGGgaauacgACCGACGCGGUgcugcuaucgUGCcCGAa -3' miRNA: 3'- cCGCCaa-----UGGCUGUGCCGa---------ACGuGUU- -5' |
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24345 | 5' | -54.5 | NC_005264.1 | + | 17881 | 0.7 | 0.791173 |
Target: 5'- cGGCGG--GCUGAUcuACGGCgcGCACAGc -3' miRNA: 3'- -CCGCCaaUGGCUG--UGCCGaaCGUGUU- -5' |
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24345 | 5' | -54.5 | NC_005264.1 | + | 75064 | 0.66 | 0.94102 |
Target: 5'- cGGCGGaguaGCUGACGCGGagagGCAgGGu -3' miRNA: 3'- -CCGCCaa--UGGCUGUGCCgaa-CGUgUU- -5' |
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24345 | 5' | -54.5 | NC_005264.1 | + | 56437 | 0.68 | 0.874581 |
Target: 5'- cGCGGUgcuUGCCGACguagGCGGC--GUACAGa -3' miRNA: 3'- cCGCCA---AUGGCUG----UGCCGaaCGUGUU- -5' |
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24345 | 5' | -54.5 | NC_005264.1 | + | 35807 | 0.72 | 0.703404 |
Target: 5'- uGGCGGgcgccucUGCCGGCcccgcaaugGCGGCccgUGCACGGa -3' miRNA: 3'- -CCGCCa------AUGGCUG---------UGCCGa--ACGUGUU- -5' |
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24345 | 5' | -54.5 | NC_005264.1 | + | 103810 | 0.74 | 0.589933 |
Target: 5'- cGGCGGg-ACCG-CGgGGCUUGCGCu- -3' miRNA: 3'- -CCGCCaaUGGCuGUgCCGAACGUGuu -5' |
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24345 | 5' | -54.5 | NC_005264.1 | + | 141468 | 0.66 | 0.934698 |
Target: 5'- cGGCGGggccucuuuccaccgGCCGAgGCGGCccgGgACGAa -3' miRNA: 3'- -CCGCCaa-------------UGGCUgUGCCGaa-CgUGUU- -5' |
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24345 | 5' | -54.5 | NC_005264.1 | + | 123488 | 0.67 | 0.902101 |
Target: 5'- uGCGGUgGCCG-CGCGGUUgcUGgGCGAu -3' miRNA: 3'- cCGCCAaUGGCuGUGCCGA--ACgUGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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