Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 24346 | 3' | -59.3 | NC_005264.1 | + | 10500 | 0.66 | 0.804414 |
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Target: 5'- cCUCCCCGAuUGCCugaGCGUCgACGa- -3' miRNA: 3'- -GAGGGGCUcACGGuuaCGCGG-UGCcc -5' |
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| 24346 | 3' | -59.3 | NC_005264.1 | + | 132763 | 0.66 | 0.81293 |
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Target: 5'- uCUgUCCGGGcGCgGcgGCGCCGacgaGGGg -3' miRNA: 3'- -GAgGGGCUCaCGgUuaCGCGGUg---CCC- -5' |
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| 24346 | 3' | -59.3 | NC_005264.1 | + | 133226 | 0.66 | 0.81293 |
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Target: 5'- -aCCCCGuGcGCCGccGCGCUACGc- -3' miRNA: 3'- gaGGGGCuCaCGGUuaCGCGGUGCcc -5' |
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| 24346 | 3' | -59.3 | NC_005264.1 | + | 104884 | 0.66 | 0.819633 |
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Target: 5'- gCUUUCCGGGaacaggccucagGCCGAacagGCGCCauaGCGGGa -3' miRNA: 3'- -GAGGGGCUCa-----------CGGUUa---CGCGG---UGCCC- -5' |
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| 24346 | 3' | -59.3 | NC_005264.1 | + | 36740 | 0.66 | 0.821293 |
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Target: 5'- uUCCCCGcAGcGCgAcgGCGCCGgcCGGc -3' miRNA: 3'- gAGGGGC-UCaCGgUuaCGCGGU--GCCc -5' |
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| 24346 | 3' | -59.3 | NC_005264.1 | + | 76400 | 0.66 | 0.821293 |
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Target: 5'- gUCUCCauuaUGCCGugcgcgauuggGUGCGCCACGGu -3' miRNA: 3'- gAGGGGcuc-ACGGU-----------UACGCGGUGCCc -5' |
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| 24346 | 3' | -59.3 | NC_005264.1 | + | 88208 | 0.66 | 0.821293 |
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Target: 5'- uCUUCUCGAGggaCAugaGCGCCAgGGGg -3' miRNA: 3'- -GAGGGGCUCacgGUua-CGCGGUgCCC- -5' |
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| 24346 | 3' | -59.3 | NC_005264.1 | + | 99823 | 0.66 | 0.821293 |
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Target: 5'- -aCCCCGGGguaagGCUggAGUGCGCCAagcacgccuUGGa -3' miRNA: 3'- gaGGGGCUCa----CGG--UUACGCGGU---------GCCc -5' |
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| 24346 | 3' | -59.3 | NC_005264.1 | + | 155766 | 0.66 | 0.821293 |
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Target: 5'- uUCCCCGcAGcGCgAcgGCGCCGgcCGGc -3' miRNA: 3'- gAGGGGC-UCaCGgUuaCGCGGU--GCCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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