Results 41 - 49 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24346 | 3' | -59.3 | NC_005264.1 | + | 132763 | 0.66 | 0.81293 |
Target: 5'- uCUgUCCGGGcGCgGcgGCGCCGacgaGGGg -3' miRNA: 3'- -GAgGGGCUCaCGgUuaCGCGGUg---CCC- -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 129621 | 0.66 | 0.804414 |
Target: 5'- gCUUCUCGAGUagacGCCGA-GCGCCGCc-- -3' miRNA: 3'- -GAGGGGCUCA----CGGUUaCGCGGUGccc -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 126690 | 0.66 | 0.795751 |
Target: 5'- gCUUCCCGAGcucGCaCA--GCGCUACGuGGg -3' miRNA: 3'- -GAGGGGCUCa--CG-GUuaCGCGGUGC-CC- -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 124750 | 0.66 | 0.795751 |
Target: 5'- uUUCCCGGGggGCCAAggaaGCaCgGCGGGu -3' miRNA: 3'- gAGGGGCUCa-CGGUUa---CGcGgUGCCC- -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 143442 | 0.66 | 0.795751 |
Target: 5'- cCUCCCCcaucauGUcGCCAAUGCGCCccaaACGc- -3' miRNA: 3'- -GAGGGGcu----CA-CGGUUACGCGG----UGCcc -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 8812 | 0.66 | 0.786951 |
Target: 5'- cCUCUUCGAGcGCCGcucGCGgCACGGa -3' miRNA: 3'- -GAGGGGCUCaCGGUua-CGCgGUGCCc -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 29189 | 0.67 | 0.768966 |
Target: 5'- gCUCCCCaGGUGgCGugcaaguguugcGUGCGUCACcgauGGGg -3' miRNA: 3'- -GAGGGGcUCACgGU------------UACGCGGUG----CCC- -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 4597 | 0.67 | 0.750525 |
Target: 5'- cCUCCCC----GCCA--GCGCCGCGGcGg -3' miRNA: 3'- -GAGGGGcucaCGGUuaCGCGGUGCC-C- -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 99823 | 0.66 | 0.821293 |
Target: 5'- -aCCCCGGGguaagGCUggAGUGCGCCAagcacgccuUGGa -3' miRNA: 3'- gaGGGGCUCa----CGG--UUACGCGGU---------GCCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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