miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24346 3' -59.3 NC_005264.1 + 4597 0.67 0.750525
Target:  5'- cCUCCCC----GCCA--GCGCCGCGGcGg -3'
miRNA:   3'- -GAGGGGcucaCGGUuaCGCGGUGCC-C- -5'
24346 3' -59.3 NC_005264.1 + 37652 0.67 0.722153
Target:  5'- -gCCCCacaucGUGCacgCGAUGCGCgACGGGc -3'
miRNA:   3'- gaGGGGcu---CACG---GUUACGCGgUGCCC- -5'
24346 3' -59.3 NC_005264.1 + 92158 0.67 0.721195
Target:  5'- -gCCCgCGGGcguaaaaauugccUGCCGGcgGCGCCGCGGc -3'
miRNA:   3'- gaGGG-GCUC-------------ACGGUUa-CGCGGUGCCc -5'
24346 3' -59.3 NC_005264.1 + 87626 0.68 0.71254
Target:  5'- -gCCgCGcAGgGCCGAUGCaGCCGCGuGGg -3'
miRNA:   3'- gaGGgGC-UCaCGGUUACG-CGGUGC-CC- -5'
24346 3' -59.3 NC_005264.1 + 32039 0.68 0.71254
Target:  5'- -gCCCCgGAGUGCgAGccagGCGCC-CGGa -3'
miRNA:   3'- gaGGGG-CUCACGgUUa---CGCGGuGCCc -5'
24346 3' -59.3 NC_005264.1 + 113075 0.68 0.69313
Target:  5'- cCUCCaaGuGUGCUAua--GCCGCGGGg -3'
miRNA:   3'- -GAGGggCuCACGGUuacgCGGUGCCC- -5'
24346 3' -59.3 NC_005264.1 + 38498 0.68 0.663677
Target:  5'- uCUCCCCGuacucccGCCAGUcgcccGCcCCACGGGu -3'
miRNA:   3'- -GAGGGGCuca----CGGUUA-----CGcGGUGCCC- -5'
24346 3' -59.3 NC_005264.1 + 98482 0.69 0.652813
Target:  5'- gCUCCgUGGGgugcuaaaguaucUGCCGGagGCGCCgACGGGg -3'
miRNA:   3'- -GAGGgGCUC-------------ACGGUUa-CGCGG-UGCCC- -5'
24346 3' -59.3 NC_005264.1 + 104838 0.69 0.624107
Target:  5'- gUCCgCCGGGgccgcugaGCCAcgGcCGCCGCGcGGg -3'
miRNA:   3'- gAGG-GGCUCa-------CGGUuaC-GCGGUGC-CC- -5'
24346 3' -59.3 NC_005264.1 + 29189 0.67 0.768966
Target:  5'- gCUCCCCaGGUGgCGugcaaguguugcGUGCGUCACcgauGGGg -3'
miRNA:   3'- -GAGGGGcUCACgGU------------UACGCGGUG----CCC- -5'
24346 3' -59.3 NC_005264.1 + 8812 0.66 0.786951
Target:  5'- cCUCUUCGAGcGCCGcucGCGgCACGGa -3'
miRNA:   3'- -GAGGGGCUCaCGGUua-CGCgGUGCCc -5'
24346 3' -59.3 NC_005264.1 + 143442 0.66 0.795751
Target:  5'- cCUCCCCcaucauGUcGCCAAUGCGCCccaaACGc- -3'
miRNA:   3'- -GAGGGGcu----CA-CGGUUACGCGG----UGCcc -5'
24346 3' -59.3 NC_005264.1 + 88208 0.66 0.821293
Target:  5'- uCUUCUCGAGggaCAugaGCGCCAgGGGg -3'
miRNA:   3'- -GAGGGGCUCacgGUua-CGCGGUgCCC- -5'
24346 3' -59.3 NC_005264.1 + 76400 0.66 0.821293
Target:  5'- gUCUCCauuaUGCCGugcgcgauuggGUGCGCCACGGu -3'
miRNA:   3'- gAGGGGcuc-ACGGU-----------UACGCGGUGCCc -5'
24346 3' -59.3 NC_005264.1 + 36740 0.66 0.821293
Target:  5'- uUCCCCGcAGcGCgAcgGCGCCGgcCGGc -3'
miRNA:   3'- gAGGGGC-UCaCGgUuaCGCGGU--GCCc -5'
24346 3' -59.3 NC_005264.1 + 133226 0.66 0.81293
Target:  5'- -aCCCCGuGcGCCGccGCGCUACGc- -3'
miRNA:   3'- gaGGGGCuCaCGGUuaCGCGGUGCcc -5'
24346 3' -59.3 NC_005264.1 + 132763 0.66 0.81293
Target:  5'- uCUgUCCGGGcGCgGcgGCGCCGacgaGGGg -3'
miRNA:   3'- -GAgGGGCUCaCGgUuaCGCGGUg---CCC- -5'
24346 3' -59.3 NC_005264.1 + 129621 0.66 0.804414
Target:  5'- gCUUCUCGAGUagacGCCGA-GCGCCGCc-- -3'
miRNA:   3'- -GAGGGGCUCA----CGGUUaCGCGGUGccc -5'
24346 3' -59.3 NC_005264.1 + 126690 0.66 0.795751
Target:  5'- gCUUCCCGAGcucGCaCA--GCGCUACGuGGg -3'
miRNA:   3'- -GAGGGGCUCa--CG-GUuaCGCGGUGC-CC- -5'
24346 3' -59.3 NC_005264.1 + 124750 0.66 0.795751
Target:  5'- uUUCCCGGGggGCCAAggaaGCaCgGCGGGu -3'
miRNA:   3'- gAGGGGCUCa-CGGUUa---CGcGgUGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.