miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24346 3' -59.3 NC_005264.1 + 39940 0.69 0.624107
Target:  5'- -aCCCCGGGUgggGCCAcgGCGaCCuCGGc -3'
miRNA:   3'- gaGGGGCUCA---CGGUuaCGC-GGuGCCc -5'
24346 3' -59.3 NC_005264.1 + 109890 0.8 0.152589
Target:  5'- -aCCCCGcG-GCgCAAUGCGCCGCGGGc -3'
miRNA:   3'- gaGGGGCuCaCG-GUUACGCGGUGCCC- -5'
24346 3' -59.3 NC_005264.1 + 87626 0.68 0.71254
Target:  5'- -gCCgCGcAGgGCCGAUGCaGCCGCGuGGg -3'
miRNA:   3'- gaGGgGC-UCaCGGUUACG-CGGUGC-CC- -5'
24346 3' -59.3 NC_005264.1 + 222 0.7 0.584625
Target:  5'- -cCCCCGAucgcuuuccGUGCCug-GCGCCacagcgagGCGGGc -3'
miRNA:   3'- gaGGGGCU---------CACGGuuaCGCGG--------UGCCC- -5'
24346 3' -59.3 NC_005264.1 + 15272 0.74 0.361255
Target:  5'- uUCCCCGucgcacacgucGGcgGCCAcuucGCGCCGCGGGa -3'
miRNA:   3'- gAGGGGC-----------UCa-CGGUua--CGCGGUGCCC- -5'
24346 3' -59.3 NC_005264.1 + 144487 0.75 0.338652
Target:  5'- gCUCCCCGAaaauguucaagaGUGCCGAagGCGUCGUGGGc -3'
miRNA:   3'- -GAGGGGCU------------CACGGUUa-CGCGGUGCCC- -5'
24346 3' -59.3 NC_005264.1 + 146443 1.09 0.001658
Target:  5'- cCUCCCCGAGUGCCAAUGCGCCACGGGc -3'
miRNA:   3'- -GAGGGGCUCACGGUUACGCGGUGCCC- -5'
24346 3' -59.3 NC_005264.1 + 159358 0.69 0.611244
Target:  5'- cCUCCacgaCGcGUGCCAcaucGUggaugcggcaccggGCGCCACGGGc -3'
miRNA:   3'- -GAGGg---GCuCACGGU----UA--------------CGCGGUGCCC- -5'
24346 3' -59.3 NC_005264.1 + 44850 0.71 0.50755
Target:  5'- gUCCguCCGGGUGCCGucgagagaucUGCaGCCugGGGa -3'
miRNA:   3'- gAGG--GGCUCACGGUu---------ACG-CGGugCCC- -5'
24346 3' -59.3 NC_005264.1 + 119249 0.7 0.584625
Target:  5'- -cCCCCGAucgcuuuccGUGCCug-GCGCCacagcgagGCGGGc -3'
miRNA:   3'- gaGGGGCU---------CACGGuuaCGCGG--------UGCCC- -5'
24346 3' -59.3 NC_005264.1 + 158967 0.69 0.624107
Target:  5'- -aCCCCGGGUgggGCCAcgGCGaCCuCGGc -3'
miRNA:   3'- gaGGGGCUCA---CGGUuaCGC-GGuGCCc -5'
24346 3' -59.3 NC_005264.1 + 157525 0.68 0.663677
Target:  5'- uCUCCCCGuacucccGCCAGUcgcccGCcCCACGGGu -3'
miRNA:   3'- -GAGGGGCuca----CGGUUA-----CGcGGUGCCC- -5'
24346 3' -59.3 NC_005264.1 + 29477 0.68 0.673529
Target:  5'- uCUCgCCGAGUcGUCGAggaGgGCCGCGGu -3'
miRNA:   3'- -GAGgGGCUCA-CGGUUa--CgCGGUGCCc -5'
24346 3' -59.3 NC_005264.1 + 71428 0.68 0.683349
Target:  5'- aCUCCgCCG-GUGCCccgGCGCUA-GGGc -3'
miRNA:   3'- -GAGG-GGCuCACGGuuaCGCGGUgCCC- -5'
24346 3' -59.3 NC_005264.1 + 151066 0.68 0.71254
Target:  5'- -gCCCCgGAGUGCgAGccagGCGCC-CGGa -3'
miRNA:   3'- gaGGGG-CUCACGgUUa---CGCGGuGCCc -5'
24346 3' -59.3 NC_005264.1 + 88033 0.67 0.731694
Target:  5'- uUCCUCGGG-GCCGAaGCGUacaggucaaUACGGGc -3'
miRNA:   3'- gAGGGGCUCaCGGUUaCGCG---------GUGCCC- -5'
24346 3' -59.3 NC_005264.1 + 35147 0.67 0.731694
Target:  5'- uUCCCCGGccugGCCGcgGUGUGUCugGuGGg -3'
miRNA:   3'- gAGGGGCUca--CGGU--UACGCGGugC-CC- -5'
24346 3' -59.3 NC_005264.1 + 76649 0.67 0.741154
Target:  5'- -aCCaUCGAG-GCCGAUGCGgCCACcGGu -3'
miRNA:   3'- gaGG-GGCUCaCGGUUACGC-GGUGcCC- -5'
24346 3' -59.3 NC_005264.1 + 123624 0.67 0.750525
Target:  5'- cCUCCCC----GCCA--GCGCCGCGGcGg -3'
miRNA:   3'- -GAGGGGcucaCGGUuaCGCGGUGCC-C- -5'
24346 3' -59.3 NC_005264.1 + 104884 0.66 0.819633
Target:  5'- gCUUUCCGGGaacaggccucagGCCGAacagGCGCCauaGCGGGa -3'
miRNA:   3'- -GAGGGGCUCa-----------CGGUUa---CGCGG---UGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.