Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24346 | 3' | -59.3 | NC_005264.1 | + | 85017 | 0.69 | 0.604327 |
Target: 5'- uUCgUCGcAG-GCC-AUGUGCCGCGGGg -3' miRNA: 3'- gAGgGGC-UCaCGGuUACGCGGUGCCC- -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 87626 | 0.68 | 0.71254 |
Target: 5'- -gCCgCGcAGgGCCGAUGCaGCCGCGuGGg -3' miRNA: 3'- gaGGgGC-UCaCGGUUACG-CGGUGC-CC- -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 88033 | 0.67 | 0.731694 |
Target: 5'- uUCCUCGGG-GCCGAaGCGUacaggucaaUACGGGc -3' miRNA: 3'- gAGGGGCUCaCGGUUaCGCG---------GUGCCC- -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 88208 | 0.66 | 0.821293 |
Target: 5'- uCUUCUCGAGggaCAugaGCGCCAgGGGg -3' miRNA: 3'- -GAGGGGCUCacgGUua-CGCGGUgCCC- -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 92158 | 0.67 | 0.721195 |
Target: 5'- -gCCCgCGGGcguaaaaauugccUGCCGGcgGCGCCGCGGc -3' miRNA: 3'- gaGGG-GCUC-------------ACGGUUa-CGCGGUGCCc -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 98482 | 0.69 | 0.652813 |
Target: 5'- gCUCCgUGGGgugcuaaaguaucUGCCGGagGCGCCgACGGGg -3' miRNA: 3'- -GAGGgGCUC-------------ACGGUUa-CGCGG-UGCCC- -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 99823 | 0.66 | 0.821293 |
Target: 5'- -aCCCCGGGguaagGCUggAGUGCGCCAagcacgccuUGGa -3' miRNA: 3'- gaGGGGCUCa----CGG--UUACGCGGU---------GCCc -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 100981 | 0.66 | 0.804414 |
Target: 5'- cCUCCCCa--UGCCuggaGCGCCGaGGGg -3' miRNA: 3'- -GAGGGGcucACGGuua-CGCGGUgCCC- -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 104838 | 0.69 | 0.624107 |
Target: 5'- gUCCgCCGGGgccgcugaGCCAcgGcCGCCGCGcGGg -3' miRNA: 3'- gAGG-GGCUCa-------CGGUuaC-GCGGUGC-CC- -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 104884 | 0.66 | 0.819633 |
Target: 5'- gCUUUCCGGGaacaggccucagGCCGAacagGCGCCauaGCGGGa -3' miRNA: 3'- -GAGGGGCUCa-----------CGGUUa---CGCGG---UGCCC- -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 109890 | 0.8 | 0.152589 |
Target: 5'- -aCCCCGcG-GCgCAAUGCGCCGCGGGc -3' miRNA: 3'- gaGGGGCuCaCG-GUUACGCGGUGCCC- -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 113075 | 0.68 | 0.69313 |
Target: 5'- cCUCCaaGuGUGCUAua--GCCGCGGGg -3' miRNA: 3'- -GAGGggCuCACGGUuacgCGGUGCCC- -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 119249 | 0.7 | 0.584625 |
Target: 5'- -cCCCCGAucgcuuuccGUGCCug-GCGCCacagcgagGCGGGc -3' miRNA: 3'- gaGGGGCU---------CACGGuuaCGCGG--------UGCCC- -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 123624 | 0.67 | 0.750525 |
Target: 5'- cCUCCCC----GCCA--GCGCCGCGGcGg -3' miRNA: 3'- -GAGGGGcucaCGGUuaCGCGGUGCC-C- -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 124750 | 0.66 | 0.795751 |
Target: 5'- uUUCCCGGGggGCCAAggaaGCaCgGCGGGu -3' miRNA: 3'- gAGGGGCUCa-CGGUUa---CGcGgUGCCC- -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 126690 | 0.66 | 0.795751 |
Target: 5'- gCUUCCCGAGcucGCaCA--GCGCUACGuGGg -3' miRNA: 3'- -GAGGGGCUCa--CG-GUuaCGCGGUGC-CC- -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 127838 | 0.66 | 0.786951 |
Target: 5'- cCUCUUCGAGcGCCGcucGCGgCACGGa -3' miRNA: 3'- -GAGGGGCUCaCGGUua-CGCgGUGCCc -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 129621 | 0.66 | 0.804414 |
Target: 5'- gCUUCUCGAGUagacGCCGA-GCGCCGCc-- -3' miRNA: 3'- -GAGGGGCUCA----CGGUUaCGCGGUGccc -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 132763 | 0.66 | 0.81293 |
Target: 5'- uCUgUCCGGGcGCgGcgGCGCCGacgaGGGg -3' miRNA: 3'- -GAgGGGCUCaCGgUuaCGCGGUg---CCC- -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 133226 | 0.66 | 0.81293 |
Target: 5'- -aCCCCGuGcGCCGccGCGCUACGc- -3' miRNA: 3'- gaGGGGCuCaCGGUuaCGCGGUGCcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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