miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24346 3' -59.3 NC_005264.1 + 104838 0.69 0.624107
Target:  5'- gUCCgCCGGGgccgcugaGCCAcgGcCGCCGCGcGGg -3'
miRNA:   3'- gAGG-GGCUCa-------CGGUuaC-GCGGUGC-CC- -5'
24346 3' -59.3 NC_005264.1 + 100981 0.66 0.804414
Target:  5'- cCUCCCCa--UGCCuggaGCGCCGaGGGg -3'
miRNA:   3'- -GAGGGGcucACGGuua-CGCGGUgCCC- -5'
24346 3' -59.3 NC_005264.1 + 99823 0.66 0.821293
Target:  5'- -aCCCCGGGguaagGCUggAGUGCGCCAagcacgccuUGGa -3'
miRNA:   3'- gaGGGGCUCa----CGG--UUACGCGGU---------GCCc -5'
24346 3' -59.3 NC_005264.1 + 98482 0.69 0.652813
Target:  5'- gCUCCgUGGGgugcuaaaguaucUGCCGGagGCGCCgACGGGg -3'
miRNA:   3'- -GAGGgGCUC-------------ACGGUUa-CGCGG-UGCCC- -5'
24346 3' -59.3 NC_005264.1 + 92158 0.67 0.721195
Target:  5'- -gCCCgCGGGcguaaaaauugccUGCCGGcgGCGCCGCGGc -3'
miRNA:   3'- gaGGG-GCUC-------------ACGGUUa-CGCGGUGCCc -5'
24346 3' -59.3 NC_005264.1 + 88208 0.66 0.821293
Target:  5'- uCUUCUCGAGggaCAugaGCGCCAgGGGg -3'
miRNA:   3'- -GAGGGGCUCacgGUua-CGCGGUgCCC- -5'
24346 3' -59.3 NC_005264.1 + 88033 0.67 0.731694
Target:  5'- uUCCUCGGG-GCCGAaGCGUacaggucaaUACGGGc -3'
miRNA:   3'- gAGGGGCUCaCGGUUaCGCG---------GUGCCC- -5'
24346 3' -59.3 NC_005264.1 + 87626 0.68 0.71254
Target:  5'- -gCCgCGcAGgGCCGAUGCaGCCGCGuGGg -3'
miRNA:   3'- gaGGgGC-UCaCGGUUACG-CGGUGC-CC- -5'
24346 3' -59.3 NC_005264.1 + 85017 0.69 0.604327
Target:  5'- uUCgUCGcAG-GCC-AUGUGCCGCGGGg -3'
miRNA:   3'- gAGgGGC-UCaCGGuUACGCGGUGCCC- -5'
24346 3' -59.3 NC_005264.1 + 76649 0.67 0.741154
Target:  5'- -aCCaUCGAG-GCCGAUGCGgCCACcGGu -3'
miRNA:   3'- gaGG-GGCUCaCGGUUACGC-GGUGcCC- -5'
24346 3' -59.3 NC_005264.1 + 76400 0.66 0.821293
Target:  5'- gUCUCCauuaUGCCGugcgcgauuggGUGCGCCACGGu -3'
miRNA:   3'- gAGGGGcuc-ACGGU-----------UACGCGGUGCCc -5'
24346 3' -59.3 NC_005264.1 + 71428 0.68 0.683349
Target:  5'- aCUCCgCCG-GUGCCccgGCGCUA-GGGc -3'
miRNA:   3'- -GAGG-GGCuCACGGuuaCGCGGUgCCC- -5'
24346 3' -59.3 NC_005264.1 + 63912 0.71 0.498198
Target:  5'- uUCUCCaaGGUGCCGuAUGCGUCGgCGGGg -3'
miRNA:   3'- gAGGGGc-UCACGGU-UACGCGGU-GCCC- -5'
24346 3' -59.3 NC_005264.1 + 52948 0.7 0.56505
Target:  5'- --gCCCGcG-GCgCAuUGCGCCGCGGGg -3'
miRNA:   3'- gagGGGCuCaCG-GUuACGCGGUGCCC- -5'
24346 3' -59.3 NC_005264.1 + 51227 0.68 0.683349
Target:  5'- gUCCUCGGGauCCAAUuuuacGCGCCGCGGu -3'
miRNA:   3'- gAGGGGCUCacGGUUA-----CGCGGUGCCc -5'
24346 3' -59.3 NC_005264.1 + 44850 0.71 0.50755
Target:  5'- gUCCguCCGGGUGCCGucgagagaucUGCaGCCugGGGa -3'
miRNA:   3'- gAGG--GGCUCACGGUu---------ACG-CGGugCCC- -5'
24346 3' -59.3 NC_005264.1 + 39940 0.69 0.624107
Target:  5'- -aCCCCGGGUgggGCCAcgGCGaCCuCGGc -3'
miRNA:   3'- gaGGGGCUCA---CGGUuaCGC-GGuGCCc -5'
24346 3' -59.3 NC_005264.1 + 38498 0.68 0.663677
Target:  5'- uCUCCCCGuacucccGCCAGUcgcccGCcCCACGGGu -3'
miRNA:   3'- -GAGGGGCuca----CGGUUA-----CGcGGUGCCC- -5'
24346 3' -59.3 NC_005264.1 + 37652 0.67 0.722153
Target:  5'- -gCCCCacaucGUGCacgCGAUGCGCgACGGGc -3'
miRNA:   3'- gaGGGGcu---CACG---GUUACGCGgUGCCC- -5'
24346 3' -59.3 NC_005264.1 + 36740 0.66 0.821293
Target:  5'- uUCCCCGcAGcGCgAcgGCGCCGgcCGGc -3'
miRNA:   3'- gAGGGGC-UCaCGgUuaCGCGGU--GCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.