Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24346 | 3' | -59.3 | NC_005264.1 | + | 159358 | 0.69 | 0.611244 |
Target: 5'- cCUCCacgaCGcGUGCCAcaucGUggaugcggcaccggGCGCCACGGGc -3' miRNA: 3'- -GAGGg---GCuCACGGU----UA--------------CGCGGUGCCC- -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 158967 | 0.69 | 0.624107 |
Target: 5'- -aCCCCGGGUgggGCCAcgGCGaCCuCGGc -3' miRNA: 3'- gaGGGGCUCA---CGGUuaCGC-GGuGCCc -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 157525 | 0.68 | 0.663677 |
Target: 5'- uCUCCCCGuacucccGCCAGUcgcccGCcCCACGGGu -3' miRNA: 3'- -GAGGGGCuca----CGGUUA-----CGcGGUGCCC- -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 156679 | 0.68 | 0.673529 |
Target: 5'- -gCCCCacacGUGCacgCGAUGCGCgACGGGc -3' miRNA: 3'- gaGGGGcu--CACG---GUUACGCGgUGCCC- -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 155766 | 0.66 | 0.821293 |
Target: 5'- uUCCCCGcAGcGCgAcgGCGCCGgcCGGc -3' miRNA: 3'- gAGGGGC-UCaCGgUuaCGCGGU--GCCc -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 151066 | 0.68 | 0.71254 |
Target: 5'- -gCCCCgGAGUGCgAGccagGCGCC-CGGa -3' miRNA: 3'- gaGGGG-CUCACGgUUa---CGCGGuGCCc -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 146443 | 1.09 | 0.001658 |
Target: 5'- cCUCCCCGAGUGCCAAUGCGCCACGGGc -3' miRNA: 3'- -GAGGGGCUCACGGUUACGCGGUGCCC- -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 144487 | 0.75 | 0.338652 |
Target: 5'- gCUCCCCGAaaauguucaagaGUGCCGAagGCGUCGUGGGc -3' miRNA: 3'- -GAGGGGCU------------CACGGUUa-CGCGGUGCCC- -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 143442 | 0.66 | 0.795751 |
Target: 5'- cCUCCCCcaucauGUcGCCAAUGCGCCccaaACGc- -3' miRNA: 3'- -GAGGGGcu----CA-CGGUUACGCGG----UGCcc -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 133226 | 0.66 | 0.81293 |
Target: 5'- -aCCCCGuGcGCCGccGCGCUACGc- -3' miRNA: 3'- gaGGGGCuCaCGGUuaCGCGGUGCcc -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 132763 | 0.66 | 0.81293 |
Target: 5'- uCUgUCCGGGcGCgGcgGCGCCGacgaGGGg -3' miRNA: 3'- -GAgGGGCUCaCGgUuaCGCGGUg---CCC- -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 129621 | 0.66 | 0.804414 |
Target: 5'- gCUUCUCGAGUagacGCCGA-GCGCCGCc-- -3' miRNA: 3'- -GAGGGGCUCA----CGGUUaCGCGGUGccc -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 127838 | 0.66 | 0.786951 |
Target: 5'- cCUCUUCGAGcGCCGcucGCGgCACGGa -3' miRNA: 3'- -GAGGGGCUCaCGGUua-CGCgGUGCCc -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 126690 | 0.66 | 0.795751 |
Target: 5'- gCUUCCCGAGcucGCaCA--GCGCUACGuGGg -3' miRNA: 3'- -GAGGGGCUCa--CG-GUuaCGCGGUGC-CC- -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 124750 | 0.66 | 0.795751 |
Target: 5'- uUUCCCGGGggGCCAAggaaGCaCgGCGGGu -3' miRNA: 3'- gAGGGGCUCa-CGGUUa---CGcGgUGCCC- -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 123624 | 0.67 | 0.750525 |
Target: 5'- cCUCCCC----GCCA--GCGCCGCGGcGg -3' miRNA: 3'- -GAGGGGcucaCGGUuaCGCGGUGCC-C- -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 119249 | 0.7 | 0.584625 |
Target: 5'- -cCCCCGAucgcuuuccGUGCCug-GCGCCacagcgagGCGGGc -3' miRNA: 3'- gaGGGGCU---------CACGGuuaCGCGG--------UGCCC- -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 113075 | 0.68 | 0.69313 |
Target: 5'- cCUCCaaGuGUGCUAua--GCCGCGGGg -3' miRNA: 3'- -GAGGggCuCACGGUuacgCGGUGCCC- -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 109890 | 0.8 | 0.152589 |
Target: 5'- -aCCCCGcG-GCgCAAUGCGCCGCGGGc -3' miRNA: 3'- gaGGGGCuCaCG-GUUACGCGGUGCCC- -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 104884 | 0.66 | 0.819633 |
Target: 5'- gCUUUCCGGGaacaggccucagGCCGAacagGCGCCauaGCGGGa -3' miRNA: 3'- -GAGGGGCUCa-----------CGGUUa---CGCGG---UGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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