miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24346 5' -54.5 NC_005264.1 + 82704 0.66 0.960662
Target:  5'- gCCCCCCCaauAGCGCauacUUGCUcugCGCUu- -3'
miRNA:   3'- -GGGGGGG---UCGUGa---AACGAaa-GUGGcu -5'
24346 5' -54.5 NC_005264.1 + 38376 0.66 0.960662
Target:  5'- cCUCCUCCGGCGagagcgGCga-CGCCGAg -3'
miRNA:   3'- -GGGGGGGUCGUgaaa--CGaaaGUGGCU- -5'
24346 5' -54.5 NC_005264.1 + 157403 0.66 0.960662
Target:  5'- cCUCCUCCGGCGagagcgGCga-CGCCGAg -3'
miRNA:   3'- -GGGGGGGUCGUgaaa--CGaaaGUGGCU- -5'
24346 5' -54.5 NC_005264.1 + 29189 0.66 0.948965
Target:  5'- gCUCCCCAgguggcguGCAagugUUGCgugcgUCACCGAu -3'
miRNA:   3'- gGGGGGGU--------CGUga--AACGaa---AGUGGCU- -5'
24346 5' -54.5 NC_005264.1 + 85606 0.66 0.948965
Target:  5'- aCCUuuaCCCCAGCGuCUUUaggaaGCg--CGCCGAg -3'
miRNA:   3'- -GGG---GGGGUCGU-GAAA-----CGaaaGUGGCU- -5'
24346 5' -54.5 NC_005264.1 + 135802 0.66 0.948965
Target:  5'- aCCCCCCgugcaAGCugUUUGauuaCAUCGAc -3'
miRNA:   3'- gGGGGGG-----UCGugAAACgaaaGUGGCU- -5'
24346 5' -54.5 NC_005264.1 + 70317 0.66 0.948965
Target:  5'- uCCCCgCCGGCGC---GCUg--ACCGAg -3'
miRNA:   3'- -GGGGgGGUCGUGaaaCGAaagUGGCU- -5'
24346 5' -54.5 NC_005264.1 + 80403 0.66 0.944602
Target:  5'- gCCCCCCCaAGCgACgaaaugGCgcUUAUCGAa -3'
miRNA:   3'- -GGGGGGG-UCG-UGaaa---CGaaAGUGGCU- -5'
24346 5' -54.5 NC_005264.1 + 161166 0.66 0.944602
Target:  5'- gCCgCCCCAaUACUUUGCcc-CACCGu -3'
miRNA:   3'- -GGgGGGGUcGUGAAACGaaaGUGGCu -5'
24346 5' -54.5 NC_005264.1 + 84864 0.66 0.940002
Target:  5'- gCCCgCUCCGGUACgc-GCgg-CGCCGGc -3'
miRNA:   3'- -GGG-GGGGUCGUGaaaCGaaaGUGGCU- -5'
24346 5' -54.5 NC_005264.1 + 55137 0.66 0.940002
Target:  5'- aCCCCgCCguGCGCUgUGCUggCGCa-- -3'
miRNA:   3'- -GGGG-GGguCGUGAaACGAaaGUGgcu -5'
24346 5' -54.5 NC_005264.1 + 63425 0.66 0.938576
Target:  5'- aCCgCCCgauGGCGCUUUGCgugccagaggugaaCGCCGAg -3'
miRNA:   3'- gGGgGGG---UCGUGAAACGaaa-----------GUGGCU- -5'
24346 5' -54.5 NC_005264.1 + 120990 0.67 0.933664
Target:  5'- cCCCCCCCGagcucccauauGCACUUccuuucccaucuuaUGCUcgccUUCcCCGGu -3'
miRNA:   3'- -GGGGGGGU-----------CGUGAA--------------ACGA----AAGuGGCU- -5'
24346 5' -54.5 NC_005264.1 + 40368 0.67 0.930083
Target:  5'- aCCCUCgUGGCGCUUUGCgagcagCGCgGGc -3'
miRNA:   3'- -GGGGGgGUCGUGAAACGaaa---GUGgCU- -5'
24346 5' -54.5 NC_005264.1 + 159395 0.67 0.930083
Target:  5'- aCCCUCgUGGCGCUUUGCgagcagCGCgGGc -3'
miRNA:   3'- -GGGGGgGUCGUGAAACGaaa---GUGgCU- -5'
24346 5' -54.5 NC_005264.1 + 106302 0.67 0.930083
Target:  5'- uCCCCgCCGGCACcaucaccugUGCcgccggcgCGCCGAu -3'
miRNA:   3'- -GGGGgGGUCGUGaa-------ACGaaa-----GUGGCU- -5'
24346 5' -54.5 NC_005264.1 + 1964 0.67 0.929562
Target:  5'- cCCCCCCCGagcucccauauGCACUUccuuuccaucuuaUGCUcgccUUCcCCGGu -3'
miRNA:   3'- -GGGGGGGU-----------CGUGAA-------------ACGA----AAGuGGCU- -5'
24346 5' -54.5 NC_005264.1 + 22062 0.67 0.924762
Target:  5'- uCCCCUCCguGGUACg--GCUUUCGgUGGu -3'
miRNA:   3'- -GGGGGGG--UCGUGaaaCGAAAGUgGCU- -5'
24346 5' -54.5 NC_005264.1 + 72138 0.67 0.913396
Target:  5'- aCUCCUCCGGCAUgaUGCUggCGCUc- -3'
miRNA:   3'- -GGGGGGGUCGUGaaACGAaaGUGGcu -5'
24346 5' -54.5 NC_005264.1 + 61447 0.68 0.907353
Target:  5'- gCUCCUCGGCGCcgagUUGCUcgagCGCCGu -3'
miRNA:   3'- gGGGGGGUCGUGa---AACGAaa--GUGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.