miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24346 5' -54.5 NC_005264.1 + 146477 1.11 0.003237
Target:  5'- uCCCCCCCAGCACUUUGCUUUCACCGAg -3'
miRNA:   3'- -GGGGGGGUCGUGAAACGAAAGUGGCU- -5'
24346 5' -54.5 NC_005264.1 + 60772 0.75 0.540444
Target:  5'- uUCCCCCCAGC-CU---CUUUCGCUGAa -3'
miRNA:   3'- -GGGGGGGUCGuGAaacGAAAGUGGCU- -5'
24346 5' -54.5 NC_005264.1 + 144331 0.72 0.723639
Target:  5'- gCCCCCgaUCGGCAaggcGUUUUCGCCGAa -3'
miRNA:   3'- -GGGGG--GGUCGUgaaaCGAAAGUGGCU- -5'
24346 5' -54.5 NC_005264.1 + 142378 0.71 0.733535
Target:  5'- gCCCUCCCAuGCGCgccGCUgucCGCCGGc -3'
miRNA:   3'- -GGGGGGGU-CGUGaaaCGAaa-GUGGCU- -5'
24346 5' -54.5 NC_005264.1 + 114231 0.71 0.743342
Target:  5'- aCCUCCCCGGCcuACgc-GUUUUCGCCa- -3'
miRNA:   3'- -GGGGGGGUCG--UGaaaCGAAAGUGGcu -5'
24346 5' -54.5 NC_005264.1 + 75275 0.71 0.743342
Target:  5'- uCCUCgUCGGCGCUUUGCUggu-CCGAu -3'
miRNA:   3'- -GGGGgGGUCGUGAAACGAaaguGGCU- -5'
24346 5' -54.5 NC_005264.1 + 122052 0.71 0.762651
Target:  5'- gCCCCCC-GCAgUUUGCag-CGCCGc -3'
miRNA:   3'- gGGGGGGuCGUgAAACGaaaGUGGCu -5'
24346 5' -54.5 NC_005264.1 + 3025 0.71 0.762651
Target:  5'- gCCCCCC-GCAgUUUGCag-CGCCGc -3'
miRNA:   3'- gGGGGGGuCGUgAAACGaaaGUGGCu -5'
24346 5' -54.5 NC_005264.1 + 94448 0.7 0.790715
Target:  5'- uCCUCCCgCAGaGCgagucgUUGCUcUUCACCGAg -3'
miRNA:   3'- -GGGGGG-GUCgUGa-----AACGA-AAGUGGCU- -5'
24346 5' -54.5 NC_005264.1 + 107294 0.7 0.808718
Target:  5'- cCCCCUCCAGUACUUccg--UCGCCa- -3'
miRNA:   3'- -GGGGGGGUCGUGAAacgaaAGUGGcu -5'
24346 5' -54.5 NC_005264.1 + 146375 0.7 0.808718
Target:  5'- gCCCCCCAGCGCUgg---UUCgACCa- -3'
miRNA:   3'- gGGGGGGUCGUGAaacgaAAG-UGGcu -5'
24346 5' -54.5 NC_005264.1 + 35908 0.7 0.822658
Target:  5'- gUCCCCCCAGUACUccgGCgagagaccuCCGAc -3'
miRNA:   3'- -GGGGGGGUCGUGAaa-CGaaagu----GGCU- -5'
24346 5' -54.5 NC_005264.1 + 154934 0.69 0.853914
Target:  5'- gUCCCCCCAGUACUccgGCgaggagaccuCCGAc -3'
miRNA:   3'- -GGGGGGGUCGUGAaa-CGaaagu-----GGCU- -5'
24346 5' -54.5 NC_005264.1 + 10728 0.69 0.86622
Target:  5'- gUCCCCCGGCGCg--Ga---CACCGAc -3'
miRNA:   3'- gGGGGGGUCGUGaaaCgaaaGUGGCU- -5'
24346 5' -54.5 NC_005264.1 + 27318 0.69 0.86622
Target:  5'- gUCCCCgAGCACUaUUGUcccgUCGCCGu -3'
miRNA:   3'- gGGGGGgUCGUGA-AACGaa--AGUGGCu -5'
24346 5' -54.5 NC_005264.1 + 149716 0.69 0.86622
Target:  5'- aUCCCCUagaAGCGC-UUGCUguaguggCGCCGGc -3'
miRNA:   3'- -GGGGGGg--UCGUGaAACGAaa-----GUGGCU- -5'
24346 5' -54.5 NC_005264.1 + 81147 0.68 0.887809
Target:  5'- aCCCCCacaGGCACgc-GCUgaUCACCa- -3'
miRNA:   3'- gGGGGGg--UCGUGaaaCGAa-AGUGGcu -5'
24346 5' -54.5 NC_005264.1 + 104937 0.68 0.894557
Target:  5'- -aCCCCCAGCcg--UGCcaagCGCCGAg -3'
miRNA:   3'- ggGGGGGUCGugaaACGaaa-GUGGCU- -5'
24346 5' -54.5 NC_005264.1 + 160339 0.68 0.901072
Target:  5'- aCCUCCCCGGCAUgugUGCUagaaagaUACCa- -3'
miRNA:   3'- -GGGGGGGUCGUGaa-ACGAaa-----GUGGcu -5'
24346 5' -54.5 NC_005264.1 + 61447 0.68 0.907353
Target:  5'- gCUCCUCGGCGCcgagUUGCUcgagCGCCGu -3'
miRNA:   3'- gGGGGGGUCGUGa---AACGAaa--GUGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.