miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24346 5' -54.5 NC_005264.1 + 80403 0.66 0.944602
Target:  5'- gCCCCCCCaAGCgACgaaaugGCgcUUAUCGAa -3'
miRNA:   3'- -GGGGGGG-UCG-UGaaa---CGaaAGUGGCU- -5'
24346 5' -54.5 NC_005264.1 + 107294 0.7 0.808718
Target:  5'- cCCCCUCCAGUACUUccg--UCGCCa- -3'
miRNA:   3'- -GGGGGGGUCGUGAAacgaaAGUGGcu -5'
24346 5' -54.5 NC_005264.1 + 3025 0.71 0.762651
Target:  5'- gCCCCCC-GCAgUUUGCag-CGCCGc -3'
miRNA:   3'- gGGGGGGuCGUgAAACGaaaGUGGCu -5'
24346 5' -54.5 NC_005264.1 + 146477 1.11 0.003237
Target:  5'- uCCCCCCCAGCACUUUGCUUUCACCGAg -3'
miRNA:   3'- -GGGGGGGUCGUGAAACGAAAGUGGCU- -5'
24346 5' -54.5 NC_005264.1 + 22062 0.67 0.924762
Target:  5'- uCCCCUCCguGGUACg--GCUUUCGgUGGu -3'
miRNA:   3'- -GGGGGGG--UCGUGaaaCGAAAGUgGCU- -5'
24346 5' -54.5 NC_005264.1 + 38376 0.66 0.960662
Target:  5'- cCUCCUCCGGCGagagcgGCga-CGCCGAg -3'
miRNA:   3'- -GGGGGGGUCGUgaaa--CGaaaGUGGCU- -5'
24346 5' -54.5 NC_005264.1 + 82704 0.66 0.960662
Target:  5'- gCCCCCCCaauAGCGCauacUUGCUcugCGCUu- -3'
miRNA:   3'- -GGGGGGG---UCGUGa---AACGAaa-GUGGcu -5'
24346 5' -54.5 NC_005264.1 + 85606 0.66 0.948965
Target:  5'- aCCUuuaCCCCAGCGuCUUUaggaaGCg--CGCCGAg -3'
miRNA:   3'- -GGG---GGGGUCGU-GAAA-----CGaaaGUGGCU- -5'
24346 5' -54.5 NC_005264.1 + 29189 0.66 0.948965
Target:  5'- gCUCCCCAgguggcguGCAagugUUGCgugcgUCACCGAu -3'
miRNA:   3'- gGGGGGGU--------CGUga--AACGaa---AGUGGCU- -5'
24346 5' -54.5 NC_005264.1 + 146375 0.7 0.808718
Target:  5'- gCCCCCCAGCGCUgg---UUCgACCa- -3'
miRNA:   3'- gGGGGGGUCGUGAaacgaAAG-UGGcu -5'
24346 5' -54.5 NC_005264.1 + 149716 0.69 0.86622
Target:  5'- aUCCCCUagaAGCGC-UUGCUguaguggCGCCGGc -3'
miRNA:   3'- -GGGGGGg--UCGUGaAACGAaa-----GUGGCU- -5'
24346 5' -54.5 NC_005264.1 + 81147 0.68 0.887809
Target:  5'- aCCCCCacaGGCACgc-GCUgaUCACCa- -3'
miRNA:   3'- gGGGGGg--UCGUGaaaCGAa-AGUGGcu -5'
24346 5' -54.5 NC_005264.1 + 84864 0.66 0.940002
Target:  5'- gCCCgCUCCGGUACgc-GCgg-CGCCGGc -3'
miRNA:   3'- -GGG-GGGGUCGUGaaaCGaaaGUGGCU- -5'
24346 5' -54.5 NC_005264.1 + 27318 0.69 0.86622
Target:  5'- gUCCCCgAGCACUaUUGUcccgUCGCCGu -3'
miRNA:   3'- gGGGGGgUCGUGA-AACGaa--AGUGGCu -5'
24346 5' -54.5 NC_005264.1 + 40368 0.67 0.930083
Target:  5'- aCCCUCgUGGCGCUUUGCgagcagCGCgGGc -3'
miRNA:   3'- -GGGGGgGUCGUGAAACGaaa---GUGgCU- -5'
24346 5' -54.5 NC_005264.1 + 104937 0.68 0.894557
Target:  5'- -aCCCCCAGCcg--UGCcaagCGCCGAg -3'
miRNA:   3'- ggGGGGGUCGugaaACGaaa-GUGGCU- -5'
24346 5' -54.5 NC_005264.1 + 35908 0.7 0.822658
Target:  5'- gUCCCCCCAGUACUccgGCgagagaccuCCGAc -3'
miRNA:   3'- -GGGGGGGUCGUGAaa-CGaaagu----GGCU- -5'
24346 5' -54.5 NC_005264.1 + 94448 0.7 0.790715
Target:  5'- uCCUCCCgCAGaGCgagucgUUGCUcUUCACCGAg -3'
miRNA:   3'- -GGGGGG-GUCgUGa-----AACGA-AAGUGGCU- -5'
24346 5' -54.5 NC_005264.1 + 1964 0.67 0.929562
Target:  5'- cCCCCCCCGagcucccauauGCACUUccuuuccaucuuaUGCUcgccUUCcCCGGu -3'
miRNA:   3'- -GGGGGGGU-----------CGUGAA-------------ACGA----AAGuGGCU- -5'
24346 5' -54.5 NC_005264.1 + 160339 0.68 0.901072
Target:  5'- aCCUCCCCGGCAUgugUGCUagaaagaUACCa- -3'
miRNA:   3'- -GGGGGGGUCGUGaa-ACGAaa-----GUGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.