Results 41 - 48 of 48 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 24347 | 3' | -51.6 | NC_005264.1 | + | 14392 | 0.74 | 0.71778 |
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Target: 5'- uCGCGGGCGCc---GGCUGUUCUGACc -3' miRNA: 3'- cGCGUUCGCGauucUCGAUAGGACUG- -5' |
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| 24347 | 3' | -51.6 | NC_005264.1 | + | 32346 | 0.74 | 0.707413 |
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Target: 5'- aGUGCuucgggGGGUGCUucGGGGCUGUUCUGGCg -3' miRNA: 3'- -CGCG------UUCGCGAu-UCUCGAUAGGACUG- -5' |
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| 24347 | 3' | -51.6 | NC_005264.1 | + | 151373 | 0.74 | 0.707413 |
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Target: 5'- aGUGCuucgggGGGUGCUucGGGGCUGUUCUGGCg -3' miRNA: 3'- -CGCG------UUCGCGAu-UCUCGAUAGGACUG- -5' |
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| 24347 | 3' | -51.6 | NC_005264.1 | + | 18147 | 0.75 | 0.654744 |
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Target: 5'- gGCGCGAGCgGCUAAGAGacaggcuUGUCggCUGACg -3' miRNA: 3'- -CGCGUUCG-CGAUUCUCg------AUAG--GACUG- -5' |
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| 24347 | 3' | -51.6 | NC_005264.1 | + | 35276 | 0.75 | 0.654744 |
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Target: 5'- gGCGCGGGCGC----GGCcgugGUCCUGACu -3' miRNA: 3'- -CGCGUUCGCGauucUCGa---UAGGACUG- -5' |
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| 24347 | 3' | -51.6 | NC_005264.1 | + | 101685 | 0.79 | 0.445332 |
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Target: 5'- uGCGCGAGCGCgaagcaaacgaucAGGAGCUGUCCagGAa -3' miRNA: 3'- -CGCGUUCGCGa------------UUCUCGAUAGGa-CUg -5' |
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| 24347 | 3' | -51.6 | NC_005264.1 | + | 97723 | 0.82 | 0.320449 |
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Target: 5'- aGCGCcgccAGGCGCcAAGAGCUGUCC-GACa -3' miRNA: 3'- -CGCG----UUCGCGaUUCUCGAUAGGaCUG- -5' |
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| 24347 | 3' | -51.6 | NC_005264.1 | + | 146311 | 1.12 | 0.004105 |
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Target: 5'- cGCGCAAGCGCUAAGAGCUAUCCUGACu -3' miRNA: 3'- -CGCGUUCGCGAUUCUCGAUAGGACUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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