Results 41 - 48 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24347 | 3' | -51.6 | NC_005264.1 | + | 113645 | 0.66 | 0.982128 |
Target: 5'- aGCGCGGGCGU---GAGCg--CUUGAg -3' miRNA: 3'- -CGCGUUCGCGauuCUCGauaGGACUg -5' |
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24347 | 3' | -51.6 | NC_005264.1 | + | 110163 | 0.66 | 0.982128 |
Target: 5'- cCGCc-GCgGCUuuGGGGcCUAUCCUGGCa -3' miRNA: 3'- cGCGuuCG-CGAu-UCUC-GAUAGGACUG- -5' |
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24347 | 3' | -51.6 | NC_005264.1 | + | 52882 | 0.66 | 0.982128 |
Target: 5'- cGCGCGAGCGa--GGGGCUG-CgUGGu -3' miRNA: 3'- -CGCGUUCGCgauUCUCGAUaGgACUg -5' |
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24347 | 3' | -51.6 | NC_005264.1 | + | 29097 | 0.66 | 0.982128 |
Target: 5'- uGCGUAuaggcucccAGCGCcgcAAGGGCUGUCgUGcCa -3' miRNA: 3'- -CGCGU---------UCGCGa--UUCUCGAUAGgACuG- -5' |
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24347 | 3' | -51.6 | NC_005264.1 | + | 125286 | 0.66 | 0.984119 |
Target: 5'- cGCgGCGGcGCGCUGuc-GCUucgCCUGACg -3' miRNA: 3'- -CG-CGUU-CGCGAUucuCGAua-GGACUG- -5' |
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24347 | 3' | -51.6 | NC_005264.1 | + | 61120 | 0.66 | 0.984119 |
Target: 5'- aGUGUucGUGCUGAu-GCUGUCCUaccGGCa -3' miRNA: 3'- -CGCGuuCGCGAUUcuCGAUAGGA---CUG- -5' |
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24347 | 3' | -51.6 | NC_005264.1 | + | 39225 | 0.66 | 0.989092 |
Target: 5'- gGCGCuGGCGggGAGGGCcugcguUCCcGGCu -3' miRNA: 3'- -CGCGuUCGCgaUUCUCGau----AGGaCUG- -5' |
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24347 | 3' | -51.6 | NC_005264.1 | + | 158252 | 0.66 | 0.989092 |
Target: 5'- gGCGCuGGCGggGAGGGCcugcguUCCcGGCu -3' miRNA: 3'- -CGCGuUCGCgaUUCUCGau----AGGaCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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