Results 21 - 40 of 48 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24347 | 3' | -51.6 | NC_005264.1 | + | 114362 | 0.68 | 0.94647 |
Target: 5'- cGCGCAAcGCGC--GGGGCUA--CUGAUg -3' miRNA: 3'- -CGCGUU-CGCGauUCUCGAUagGACUG- -5' |
|||||||
24347 | 3' | -51.6 | NC_005264.1 | + | 93616 | 0.68 | 0.950878 |
Target: 5'- gGCGCAgcuGGcCGCU--GAGCUGUCCUc-- -3' miRNA: 3'- -CGCGU---UC-GCGAuuCUCGAUAGGAcug -5' |
|||||||
24347 | 3' | -51.6 | NC_005264.1 | + | 99855 | 0.68 | 0.955036 |
Target: 5'- aGCGCuacugacguGCGCcAAGGGCUgggcgaGUCCgGACg -3' miRNA: 3'- -CGCGuu-------CGCGaUUCUCGA------UAGGaCUG- -5' |
|||||||
24347 | 3' | -51.6 | NC_005264.1 | + | 64487 | 0.68 | 0.95895 |
Target: 5'- -gGCAAGCGCgccgaGAGAGUcg-CCUGGa -3' miRNA: 3'- cgCGUUCGCGa----UUCUCGauaGGACUg -5' |
|||||||
24347 | 3' | -51.6 | NC_005264.1 | + | 50582 | 0.68 | 0.95895 |
Target: 5'- aGCGCAcgcGGCGCUGAGcAGCccggcgCUgGACg -3' miRNA: 3'- -CGCGU---UCGCGAUUC-UCGaua---GGaCUG- -5' |
|||||||
24347 | 3' | -51.6 | NC_005264.1 | + | 60699 | 0.67 | 0.969269 |
Target: 5'- gGC-CAGgaaucGCGCUuAGAGCguauuUCCUGGCg -3' miRNA: 3'- -CGcGUU-----CGCGAuUCUCGau---AGGACUG- -5' |
|||||||
24347 | 3' | -51.6 | NC_005264.1 | + | 3819 | 0.67 | 0.969269 |
Target: 5'- gGUGCucccuGCGCgcgGAGAcCUGcUCCUGGCa -3' miRNA: 3'- -CGCGuu---CGCGa--UUCUcGAU-AGGACUG- -5' |
|||||||
24347 | 3' | -51.6 | NC_005264.1 | + | 82050 | 0.67 | 0.969269 |
Target: 5'- uGCGCAGGCGCgccuccucuAGAGCg--Cg-GACa -3' miRNA: 3'- -CGCGUUCGCGau-------UCUCGauaGgaCUG- -5' |
|||||||
24347 | 3' | -51.6 | NC_005264.1 | + | 121537 | 0.67 | 0.972255 |
Target: 5'- cGCGCGacuucAGCGCgGGGGGCgacuUCCcgaGACg -3' miRNA: 3'- -CGCGU-----UCGCGaUUCUCGau--AGGa--CUG- -5' |
|||||||
24347 | 3' | -51.6 | NC_005264.1 | + | 2510 | 0.67 | 0.972255 |
Target: 5'- cGCGCGacuucAGCGCgGGGGGCgacuUCCcgaGACg -3' miRNA: 3'- -CGCGU-----UCGCGaUUCUCGau--AGGa--CUG- -5' |
|||||||
24347 | 3' | -51.6 | NC_005264.1 | + | 53256 | 0.67 | 0.975026 |
Target: 5'- cCGCGGGCGCgugucuGGcuuGCUGUCCcgcGGCg -3' miRNA: 3'- cGCGUUCGCGau----UCu--CGAUAGGa--CUG- -5' |
|||||||
24347 | 3' | -51.6 | NC_005264.1 | + | 90158 | 0.67 | 0.975026 |
Target: 5'- aCGCAGGCGaucaggGGGGGCgacUCUGACu -3' miRNA: 3'- cGCGUUCGCga----UUCUCGauaGGACUG- -5' |
|||||||
24347 | 3' | -51.6 | NC_005264.1 | + | 64863 | 0.67 | 0.977343 |
Target: 5'- uGCGCGGGCGCaguuuacUAGGAuGUUGUUuuguUUGACg -3' miRNA: 3'- -CGCGUUCGCG-------AUUCU-CGAUAG----GACUG- -5' |
|||||||
24347 | 3' | -51.6 | NC_005264.1 | + | 38246 | 0.67 | 0.97759 |
Target: 5'- aGC-CAGGCGCUGuccgcGGuGCUGUCggUGACg -3' miRNA: 3'- -CGcGUUCGCGAU-----UCuCGAUAGg-ACUG- -5' |
|||||||
24347 | 3' | -51.6 | NC_005264.1 | + | 116290 | 0.67 | 0.97759 |
Target: 5'- gGCGCGGGCgGCUAc-GGCUGUggCCUucGACg -3' miRNA: 3'- -CGCGUUCG-CGAUucUCGAUA--GGA--CUG- -5' |
|||||||
24347 | 3' | -51.6 | NC_005264.1 | + | 136376 | 0.67 | 0.97759 |
Target: 5'- gGCGCGaauAGCGCUGuGGAGCga---UGGCg -3' miRNA: 3'- -CGCGU---UCGCGAU-UCUCGauaggACUG- -5' |
|||||||
24347 | 3' | -51.6 | NC_005264.1 | + | 157273 | 0.67 | 0.97759 |
Target: 5'- aGC-CAGGCGCUGuccgcGGuGCUGUCggUGACg -3' miRNA: 3'- -CGcGUUCGCGAU-----UCuCGAUAGg-ACUG- -5' |
|||||||
24347 | 3' | -51.6 | NC_005264.1 | + | 132105 | 0.67 | 0.979954 |
Target: 5'- aGCgGCucuuuGCGCgggAAGAGCc-UCCUGAUg -3' miRNA: 3'- -CG-CGuu---CGCGa--UUCUCGauAGGACUG- -5' |
|||||||
24347 | 3' | -51.6 | NC_005264.1 | + | 95735 | 0.67 | 0.979954 |
Target: 5'- aGCGCGGGCGCU-GGAGacggCCaUGGg -3' miRNA: 3'- -CGCGUUCGCGAuUCUCgauaGG-ACUg -5' |
|||||||
24347 | 3' | -51.6 | NC_005264.1 | + | 113645 | 0.66 | 0.982128 |
Target: 5'- aGCGCGGGCGU---GAGCg--CUUGAg -3' miRNA: 3'- -CGCGUUCGCGauuCUCGauaGGACUg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home