Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24347 | 3' | -51.6 | NC_005264.1 | + | 116420 | 0.74 | 0.738267 |
Target: 5'- cGCgGCAGGuCGCUGGGGGCg--UCUGGCc -3' miRNA: 3'- -CG-CGUUC-GCGAUUCUCGauaGGACUG- -5' |
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24347 | 3' | -51.6 | NC_005264.1 | + | 10560 | 0.73 | 0.768221 |
Target: 5'- uGCGCAGGCGCgcaacauaAGCaaaAUCCUGGCc -3' miRNA: 3'- -CGCGUUCGCGauuc----UCGa--UAGGACUG- -5' |
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24347 | 3' | -51.6 | NC_005264.1 | + | 43456 | 0.72 | 0.807199 |
Target: 5'- aGCGCGuuguguuugaucuucGCGCgcAGAGCUcgCUUGACa -3' miRNA: 3'- -CGCGUu--------------CGCGauUCUCGAuaGGACUG- -5' |
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24347 | 3' | -51.6 | NC_005264.1 | + | 154031 | 0.71 | 0.849953 |
Target: 5'- cCGCGagcGGCGCUcgaagAGGAGCgcuggccGUCCUGGCc -3' miRNA: 3'- cGCGU---UCGCGA-----UUCUCGa------UAGGACUG- -5' |
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24347 | 3' | -51.6 | NC_005264.1 | + | 17045 | 0.71 | 0.881106 |
Target: 5'- aGCGCGGcCGCUAAGAGCaugCC-GACc -3' miRNA: 3'- -CGCGUUcGCGAUUCUCGauaGGaCUG- -5' |
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24347 | 3' | -51.6 | NC_005264.1 | + | 9937 | 0.7 | 0.914649 |
Target: 5'- uUGCGGcGCGCUGAGAGCUAUaCU-ACa -3' miRNA: 3'- cGCGUU-CGCGAUUCUCGAUAgGAcUG- -5' |
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24347 | 3' | -51.6 | NC_005264.1 | + | 70364 | 0.69 | 0.940361 |
Target: 5'- uGCGuCAAGaUGCUGaugaacggcucgguGGAGCUGgagggcggCCUGACg -3' miRNA: 3'- -CGC-GUUC-GCGAU--------------UCUCGAUa-------GGACUG- -5' |
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24347 | 3' | -51.6 | NC_005264.1 | + | 116290 | 0.67 | 0.97759 |
Target: 5'- gGCGCGGGCgGCUAc-GGCUGUggCCUucGACg -3' miRNA: 3'- -CGCGUUCG-CGAUucUCGAUA--GGA--CUG- -5' |
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24347 | 3' | -51.6 | NC_005264.1 | + | 38246 | 0.67 | 0.97759 |
Target: 5'- aGC-CAGGCGCUGuccgcGGuGCUGUCggUGACg -3' miRNA: 3'- -CGcGUUCGCGAU-----UCuCGAUAGg-ACUG- -5' |
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24347 | 3' | -51.6 | NC_005264.1 | + | 64863 | 0.67 | 0.977343 |
Target: 5'- uGCGCGGGCGCaguuuacUAGGAuGUUGUUuuguUUGACg -3' miRNA: 3'- -CGCGUUCGCG-------AUUCU-CGAUAG----GACUG- -5' |
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24347 | 3' | -51.6 | NC_005264.1 | + | 2510 | 0.67 | 0.972255 |
Target: 5'- cGCGCGacuucAGCGCgGGGGGCgacuUCCcgaGACg -3' miRNA: 3'- -CGCGU-----UCGCGaUUCUCGau--AGGa--CUG- -5' |
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24347 | 3' | -51.6 | NC_005264.1 | + | 60699 | 0.67 | 0.969269 |
Target: 5'- gGC-CAGgaaucGCGCUuAGAGCguauuUCCUGGCg -3' miRNA: 3'- -CGcGUU-----CGCGAuUCUCGau---AGGACUG- -5' |
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24347 | 3' | -51.6 | NC_005264.1 | + | 132105 | 0.67 | 0.979954 |
Target: 5'- aGCgGCucuuuGCGCgggAAGAGCc-UCCUGAUg -3' miRNA: 3'- -CG-CGuu---CGCGa--UUCUCGauAGGACUG- -5' |
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24347 | 3' | -51.6 | NC_005264.1 | + | 95735 | 0.67 | 0.979954 |
Target: 5'- aGCGCGGGCGCU-GGAGacggCCaUGGg -3' miRNA: 3'- -CGCGUUCGCGAuUCUCgauaGG-ACUg -5' |
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24347 | 3' | -51.6 | NC_005264.1 | + | 29097 | 0.66 | 0.982128 |
Target: 5'- uGCGUAuaggcucccAGCGCcgcAAGGGCUGUCgUGcCa -3' miRNA: 3'- -CGCGU---------UCGCGa--UUCUCGAUAGgACuG- -5' |
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24347 | 3' | -51.6 | NC_005264.1 | + | 52882 | 0.66 | 0.982128 |
Target: 5'- cGCGCGAGCGa--GGGGCUG-CgUGGu -3' miRNA: 3'- -CGCGUUCGCgauUCUCGAUaGgACUg -5' |
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24347 | 3' | -51.6 | NC_005264.1 | + | 110163 | 0.66 | 0.982128 |
Target: 5'- cCGCc-GCgGCUuuGGGGcCUAUCCUGGCa -3' miRNA: 3'- cGCGuuCG-CGAu-UCUC-GAUAGGACUG- -5' |
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24347 | 3' | -51.6 | NC_005264.1 | + | 61120 | 0.66 | 0.984119 |
Target: 5'- aGUGUucGUGCUGAu-GCUGUCCUaccGGCa -3' miRNA: 3'- -CGCGuuCGCGAUUcuCGAUAGGA---CUG- -5' |
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24347 | 3' | -51.6 | NC_005264.1 | + | 125286 | 0.66 | 0.984119 |
Target: 5'- cGCgGCGGcGCGCUGuc-GCUucgCCUGACg -3' miRNA: 3'- -CG-CGUU-CGCGAUucuCGAua-GGACUG- -5' |
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24347 | 3' | -51.6 | NC_005264.1 | + | 146311 | 1.12 | 0.004105 |
Target: 5'- cGCGCAAGCGCUAAGAGCUAUCCUGACu -3' miRNA: 3'- -CGCGUUCGCGAUUCUCGAUAGGACUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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