miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24347 3' -51.6 NC_005264.1 + 64863 0.67 0.977343
Target:  5'- uGCGCGGGCGCaguuuacUAGGAuGUUGUUuuguUUGACg -3'
miRNA:   3'- -CGCGUUCGCG-------AUUCU-CGAUAG----GACUG- -5'
24347 3' -51.6 NC_005264.1 + 67630 0.73 0.768221
Target:  5'- aCGCGGGCGC--AGGGgUGUCCUGcGCg -3'
miRNA:   3'- cGCGUUCGCGauUCUCgAUAGGAC-UG- -5'
24347 3' -51.6 NC_005264.1 + 70364 0.69 0.940361
Target:  5'- uGCGuCAAGaUGCUGaugaacggcucgguGGAGCUGgagggcggCCUGACg -3'
miRNA:   3'- -CGC-GUUC-GCGAU--------------UCUCGAUa-------GGACUG- -5'
24347 3' -51.6 NC_005264.1 + 82050 0.67 0.969269
Target:  5'- uGCGCAGGCGCgccuccucuAGAGCg--Cg-GACa -3'
miRNA:   3'- -CGCGUUCGCGau-------UCUCGauaGgaCUG- -5'
24347 3' -51.6 NC_005264.1 + 90158 0.67 0.975026
Target:  5'- aCGCAGGCGaucaggGGGGGCgacUCUGACu -3'
miRNA:   3'- cGCGUUCGCga----UUCUCGauaGGACUG- -5'
24347 3' -51.6 NC_005264.1 + 93616 0.68 0.950878
Target:  5'- gGCGCAgcuGGcCGCU--GAGCUGUCCUc-- -3'
miRNA:   3'- -CGCGU---UC-GCGAuuCUCGAUAGGAcug -5'
24347 3' -51.6 NC_005264.1 + 95151 0.69 0.941809
Target:  5'- gGCcCGGGCGC--AGAGCUAUUCUGcCc -3'
miRNA:   3'- -CGcGUUCGCGauUCUCGAUAGGACuG- -5'
24347 3' -51.6 NC_005264.1 + 95735 0.67 0.979954
Target:  5'- aGCGCGGGCGCU-GGAGacggCCaUGGg -3'
miRNA:   3'- -CGCGUUCGCGAuUCUCgauaGG-ACUg -5'
24347 3' -51.6 NC_005264.1 + 97723 0.82 0.320449
Target:  5'- aGCGCcgccAGGCGCcAAGAGCUGUCC-GACa -3'
miRNA:   3'- -CGCG----UUCGCGaUUCUCGAUAGGaCUG- -5'
24347 3' -51.6 NC_005264.1 + 99855 0.68 0.955036
Target:  5'- aGCGCuacugacguGCGCcAAGGGCUgggcgaGUCCgGACg -3'
miRNA:   3'- -CGCGuu-------CGCGaUUCUCGA------UAGGaCUG- -5'
24347 3' -51.6 NC_005264.1 + 101685 0.79 0.445332
Target:  5'- uGCGCGAGCGCgaagcaaacgaucAGGAGCUGUCCagGAa -3'
miRNA:   3'- -CGCGUUCGCGa------------UUCUCGAUAGGa-CUg -5'
24347 3' -51.6 NC_005264.1 + 102996 0.66 0.982128
Target:  5'- cCGCGAGUGCguggucauGAGCUcgCUUGGu -3'
miRNA:   3'- cGCGUUCGCGauu-----CUCGAuaGGACUg -5'
24347 3' -51.6 NC_005264.1 + 110163 0.66 0.982128
Target:  5'- cCGCc-GCgGCUuuGGGGcCUAUCCUGGCa -3'
miRNA:   3'- cGCGuuCG-CGAu-UCUC-GAUAGGACUG- -5'
24347 3' -51.6 NC_005264.1 + 110663 0.7 0.888311
Target:  5'- -aGCAcauuuaucaggAGCGCcGAGAGCUA-CCUGAa -3'
miRNA:   3'- cgCGU-----------UCGCGaUUCUCGAUaGGACUg -5'
24347 3' -51.6 NC_005264.1 + 113645 0.66 0.982128
Target:  5'- aGCGCGGGCGU---GAGCg--CUUGAg -3'
miRNA:   3'- -CGCGUUCGCGauuCUCGauaGGACUg -5'
24347 3' -51.6 NC_005264.1 + 114362 0.68 0.94647
Target:  5'- cGCGCAAcGCGC--GGGGCUA--CUGAUg -3'
miRNA:   3'- -CGCGUU-CGCGauUCUCGAUagGACUG- -5'
24347 3' -51.6 NC_005264.1 + 116290 0.67 0.97759
Target:  5'- gGCGCGGGCgGCUAc-GGCUGUggCCUucGACg -3'
miRNA:   3'- -CGCGUUCG-CGAUucUCGAUA--GGA--CUG- -5'
24347 3' -51.6 NC_005264.1 + 116420 0.74 0.738267
Target:  5'- cGCgGCAGGuCGCUGGGGGCg--UCUGGCc -3'
miRNA:   3'- -CG-CGUUC-GCGAUUCUCGauaGGACUG- -5'
24347 3' -51.6 NC_005264.1 + 121537 0.67 0.972255
Target:  5'- cGCGCGacuucAGCGCgGGGGGCgacuUCCcgaGACg -3'
miRNA:   3'- -CGCGU-----UCGCGaUUCUCGau--AGGa--CUG- -5'
24347 3' -51.6 NC_005264.1 + 125286 0.66 0.984119
Target:  5'- cGCgGCGGcGCGCUGuc-GCUucgCCUGACg -3'
miRNA:   3'- -CG-CGUU-CGCGAUucuCGAua-GGACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.