miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24347 3' -51.6 NC_005264.1 + 95735 0.67 0.979954
Target:  5'- aGCGCGGGCGCU-GGAGacggCCaUGGg -3'
miRNA:   3'- -CGCGUUCGCGAuUCUCgauaGG-ACUg -5'
24347 3' -51.6 NC_005264.1 + 95151 0.69 0.941809
Target:  5'- gGCcCGGGCGC--AGAGCUAUUCUGcCc -3'
miRNA:   3'- -CGcGUUCGCGauUCUCGAUAGGACuG- -5'
24347 3' -51.6 NC_005264.1 + 93616 0.68 0.950878
Target:  5'- gGCGCAgcuGGcCGCU--GAGCUGUCCUc-- -3'
miRNA:   3'- -CGCGU---UC-GCGAuuCUCGAUAGGAcug -5'
24347 3' -51.6 NC_005264.1 + 90158 0.67 0.975026
Target:  5'- aCGCAGGCGaucaggGGGGGCgacUCUGACu -3'
miRNA:   3'- cGCGUUCGCga----UUCUCGauaGGACUG- -5'
24347 3' -51.6 NC_005264.1 + 82050 0.67 0.969269
Target:  5'- uGCGCAGGCGCgccuccucuAGAGCg--Cg-GACa -3'
miRNA:   3'- -CGCGUUCGCGau-------UCUCGauaGgaCUG- -5'
24347 3' -51.6 NC_005264.1 + 70364 0.69 0.940361
Target:  5'- uGCGuCAAGaUGCUGaugaacggcucgguGGAGCUGgagggcggCCUGACg -3'
miRNA:   3'- -CGC-GUUC-GCGAU--------------UCUCGAUa-------GGACUG- -5'
24347 3' -51.6 NC_005264.1 + 67630 0.73 0.768221
Target:  5'- aCGCGGGCGC--AGGGgUGUCCUGcGCg -3'
miRNA:   3'- cGCGUUCGCGauUCUCgAUAGGAC-UG- -5'
24347 3' -51.6 NC_005264.1 + 64863 0.67 0.977343
Target:  5'- uGCGCGGGCGCaguuuacUAGGAuGUUGUUuuguUUGACg -3'
miRNA:   3'- -CGCGUUCGCG-------AUUCU-CGAUAG----GACUG- -5'
24347 3' -51.6 NC_005264.1 + 64487 0.68 0.95895
Target:  5'- -gGCAAGCGCgccgaGAGAGUcg-CCUGGa -3'
miRNA:   3'- cgCGUUCGCGa----UUCUCGauaGGACUg -5'
24347 3' -51.6 NC_005264.1 + 61120 0.66 0.984119
Target:  5'- aGUGUucGUGCUGAu-GCUGUCCUaccGGCa -3'
miRNA:   3'- -CGCGuuCGCGAUUcuCGAUAGGA---CUG- -5'
24347 3' -51.6 NC_005264.1 + 60699 0.67 0.969269
Target:  5'- gGC-CAGgaaucGCGCUuAGAGCguauuUCCUGGCg -3'
miRNA:   3'- -CGcGUU-----CGCGAuUCUCGau---AGGACUG- -5'
24347 3' -51.6 NC_005264.1 + 53256 0.67 0.975026
Target:  5'- cCGCGGGCGCgugucuGGcuuGCUGUCCcgcGGCg -3'
miRNA:   3'- cGCGUUCGCGau----UCu--CGAUAGGa--CUG- -5'
24347 3' -51.6 NC_005264.1 + 52882 0.66 0.982128
Target:  5'- cGCGCGAGCGa--GGGGCUG-CgUGGu -3'
miRNA:   3'- -CGCGUUCGCgauUCUCGAUaGgACUg -5'
24347 3' -51.6 NC_005264.1 + 50582 0.68 0.95895
Target:  5'- aGCGCAcgcGGCGCUGAGcAGCccggcgCUgGACg -3'
miRNA:   3'- -CGCGU---UCGCGAUUC-UCGaua---GGaCUG- -5'
24347 3' -51.6 NC_005264.1 + 43456 0.72 0.807199
Target:  5'- aGCGCGuuguguuugaucuucGCGCgcAGAGCUcgCUUGACa -3'
miRNA:   3'- -CGCGUu--------------CGCGauUCUCGAuaGGACUG- -5'
24347 3' -51.6 NC_005264.1 + 39225 0.66 0.989092
Target:  5'- gGCGCuGGCGggGAGGGCcugcguUCCcGGCu -3'
miRNA:   3'- -CGCGuUCGCgaUUCUCGau----AGGaCUG- -5'
24347 3' -51.6 NC_005264.1 + 38246 0.67 0.97759
Target:  5'- aGC-CAGGCGCUGuccgcGGuGCUGUCggUGACg -3'
miRNA:   3'- -CGcGUUCGCGAU-----UCuCGAUAGg-ACUG- -5'
24347 3' -51.6 NC_005264.1 + 35276 0.75 0.654744
Target:  5'- gGCGCGGGCGC----GGCcgugGUCCUGACu -3'
miRNA:   3'- -CGCGUUCGCGauucUCGa---UAGGACUG- -5'
24347 3' -51.6 NC_005264.1 + 35004 0.71 0.849953
Target:  5'- cCGCGagcGGCGCUcgaagAGGAGCgcuggccGUCCUGGCc -3'
miRNA:   3'- cGCGU---UCGCGA-----UUCUCGa------UAGGACUG- -5'
24347 3' -51.6 NC_005264.1 + 32346 0.74 0.707413
Target:  5'- aGUGCuucgggGGGUGCUucGGGGCUGUUCUGGCg -3'
miRNA:   3'- -CGCG------UUCGCGAu-UCUCGAUAGGACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.