miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24347 3' -51.6 NC_005264.1 + 158252 0.66 0.989092
Target:  5'- gGCGCuGGCGggGAGGGCcugcguUCCcGGCu -3'
miRNA:   3'- -CGCGuUCGCgaUUCUCGau----AGGaCUG- -5'
24347 3' -51.6 NC_005264.1 + 157273 0.67 0.97759
Target:  5'- aGC-CAGGCGCUGuccgcGGuGCUGUCggUGACg -3'
miRNA:   3'- -CGcGUUCGCGAU-----UCuCGAUAGg-ACUG- -5'
24347 3' -51.6 NC_005264.1 + 156546 0.7 0.914649
Target:  5'- cGCGCAAGUGCagcuggGAGAGCUcggcgcuaacauGUCCaccgaGACc -3'
miRNA:   3'- -CGCGUUCGCGa-----UUCUCGA------------UAGGa----CUG- -5'
24347 3' -51.6 NC_005264.1 + 154031 0.71 0.849953
Target:  5'- cCGCGagcGGCGCUcgaagAGGAGCgcuggccGUCCUGGCc -3'
miRNA:   3'- cGCGU---UCGCGA-----UUCUCGa------UAGGACUG- -5'
24347 3' -51.6 NC_005264.1 + 151373 0.74 0.707413
Target:  5'- aGUGCuucgggGGGUGCUucGGGGCUGUUCUGGCg -3'
miRNA:   3'- -CGCG------UUCGCGAu-UCUCGAUAGGACUG- -5'
24347 3' -51.6 NC_005264.1 + 146311 1.12 0.004105
Target:  5'- cGCGCAAGCGCUAAGAGCUAUCCUGACu -3'
miRNA:   3'- -CGCGUUCGCGAUUCUCGAUAGGACUG- -5'
24347 3' -51.6 NC_005264.1 + 136376 0.67 0.97759
Target:  5'- gGCGCGaauAGCGCUGuGGAGCga---UGGCg -3'
miRNA:   3'- -CGCGU---UCGCGAU-UCUCGauaggACUG- -5'
24347 3' -51.6 NC_005264.1 + 132105 0.67 0.979954
Target:  5'- aGCgGCucuuuGCGCgggAAGAGCc-UCCUGAUg -3'
miRNA:   3'- -CG-CGuu---CGCGa--UUCUCGauAGGACUG- -5'
24347 3' -51.6 NC_005264.1 + 125286 0.66 0.984119
Target:  5'- cGCgGCGGcGCGCUGuc-GCUucgCCUGACg -3'
miRNA:   3'- -CG-CGUU-CGCGAUucuCGAua-GGACUG- -5'
24347 3' -51.6 NC_005264.1 + 121537 0.67 0.972255
Target:  5'- cGCGCGacuucAGCGCgGGGGGCgacuUCCcgaGACg -3'
miRNA:   3'- -CGCGU-----UCGCGaUUCUCGau--AGGa--CUG- -5'
24347 3' -51.6 NC_005264.1 + 116420 0.74 0.738267
Target:  5'- cGCgGCAGGuCGCUGGGGGCg--UCUGGCc -3'
miRNA:   3'- -CG-CGUUC-GCGAUUCUCGauaGGACUG- -5'
24347 3' -51.6 NC_005264.1 + 116290 0.67 0.97759
Target:  5'- gGCGCGGGCgGCUAc-GGCUGUggCCUucGACg -3'
miRNA:   3'- -CGCGUUCG-CGAUucUCGAUA--GGA--CUG- -5'
24347 3' -51.6 NC_005264.1 + 114362 0.68 0.94647
Target:  5'- cGCGCAAcGCGC--GGGGCUA--CUGAUg -3'
miRNA:   3'- -CGCGUU-CGCGauUCUCGAUagGACUG- -5'
24347 3' -51.6 NC_005264.1 + 113645 0.66 0.982128
Target:  5'- aGCGCGGGCGU---GAGCg--CUUGAg -3'
miRNA:   3'- -CGCGUUCGCGauuCUCGauaGGACUg -5'
24347 3' -51.6 NC_005264.1 + 110663 0.7 0.888311
Target:  5'- -aGCAcauuuaucaggAGCGCcGAGAGCUA-CCUGAa -3'
miRNA:   3'- cgCGU-----------UCGCGaUUCUCGAUaGGACUg -5'
24347 3' -51.6 NC_005264.1 + 110163 0.66 0.982128
Target:  5'- cCGCc-GCgGCUuuGGGGcCUAUCCUGGCa -3'
miRNA:   3'- cGCGuuCG-CGAu-UCUC-GAUAGGACUG- -5'
24347 3' -51.6 NC_005264.1 + 102996 0.66 0.982128
Target:  5'- cCGCGAGUGCguggucauGAGCUcgCUUGGu -3'
miRNA:   3'- cGCGUUCGCGauu-----CUCGAuaGGACUg -5'
24347 3' -51.6 NC_005264.1 + 101685 0.79 0.445332
Target:  5'- uGCGCGAGCGCgaagcaaacgaucAGGAGCUGUCCagGAa -3'
miRNA:   3'- -CGCGUUCGCGa------------UUCUCGAUAGGa-CUg -5'
24347 3' -51.6 NC_005264.1 + 99855 0.68 0.955036
Target:  5'- aGCGCuacugacguGCGCcAAGGGCUgggcgaGUCCgGACg -3'
miRNA:   3'- -CGCGuu-------CGCGaUUCUCGA------UAGGaCUG- -5'
24347 3' -51.6 NC_005264.1 + 97723 0.82 0.320449
Target:  5'- aGCGCcgccAGGCGCcAAGAGCUGUCC-GACa -3'
miRNA:   3'- -CGCG----UUCGCGaUUCUCGAUAGGaCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.