miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24347 5' -52.3 NC_005264.1 + 146348 1.13 0.003903
Target:  5'- cGCGCCGAAUGACGCAUGUGACUCGUCg -3'
miRNA:   3'- -CGCGGCUUACUGCGUACACUGAGCAG- -5'
24347 5' -52.3 NC_005264.1 + 110385 0.71 0.881473
Target:  5'- cCGCCGAcggcgGGCGCAUGcUGACgcugcucaaaagCGUCg -3'
miRNA:   3'- cGCGGCUua---CUGCGUAC-ACUGa-----------GCAG- -5'
24347 5' -52.3 NC_005264.1 + 75111 0.7 0.903154
Target:  5'- gGCGCCGAGcuggGGCGCAgucaaaUGGCcgcgCGUCa -3'
miRNA:   3'- -CGCGGCUUa---CUGCGUac----ACUGa---GCAG- -5'
24347 5' -52.3 NC_005264.1 + 3464 0.69 0.920674
Target:  5'- gGCGCCcGGUGcCGCAuccacgaUGUGGCacgCGUCg -3'
miRNA:   3'- -CGCGGcUUACuGCGU-------ACACUGa--GCAG- -5'
24347 5' -52.3 NC_005264.1 + 45814 0.69 0.932069
Target:  5'- cGCGCUGAuc-GCGC-UGU-ACUCGUCa -3'
miRNA:   3'- -CGCGGCUuacUGCGuACAcUGAGCAG- -5'
24347 5' -52.3 NC_005264.1 + 34313 0.69 0.94191
Target:  5'- gGCGCCGcgccUGACGC-UGgcUGACUCGc- -3'
miRNA:   3'- -CGCGGCuu--ACUGCGuAC--ACUGAGCag -5'
24347 5' -52.3 NC_005264.1 + 153340 0.69 0.94191
Target:  5'- gGCGCCGcgccUGACGC-UGgcUGACUCGc- -3'
miRNA:   3'- -CGCGGCuu--ACUGCGuAC--ACUGAGCag -5'
24347 5' -52.3 NC_005264.1 + 72513 0.68 0.958689
Target:  5'- uGCGCCGAGaGGCGCGUGgcGCUUu-- -3'
miRNA:   3'- -CGCGGCUUaCUGCGUACacUGAGcag -5'
24347 5' -52.3 NC_005264.1 + 2997 0.67 0.97454
Target:  5'- aGCGCCGAcUGG-GCcgGcGGCUCGg- -3'
miRNA:   3'- -CGCGGCUuACUgCGuaCaCUGAGCag -5'
24347 5' -52.3 NC_005264.1 + 95462 0.67 0.97454
Target:  5'- cGCGCCGGcgGGCGCAgcgagcgcgGGCgcuaCGUUu -3'
miRNA:   3'- -CGCGGCUuaCUGCGUaca------CUGa---GCAG- -5'
24347 5' -52.3 NC_005264.1 + 51934 0.67 0.97454
Target:  5'- cGCGCCGAGcuUGGCGaggGUGccGCUaacgCGUCg -3'
miRNA:   3'- -CGCGGCUU--ACUGCguaCAC--UGA----GCAG- -5'
24347 5' -52.3 NC_005264.1 + 16572 0.67 0.977085
Target:  5'- gGCGCCGGGgcggcGGCGCAcaUGACUCc-- -3'
miRNA:   3'- -CGCGGCUUa----CUGCGUacACUGAGcag -5'
24347 5' -52.3 NC_005264.1 + 74739 0.67 0.97921
Target:  5'- cGCGCCGGccGACGC-UGUGcccgacgcgcacuGCUUGg- -3'
miRNA:   3'- -CGCGGCUuaCUGCGuACAC-------------UGAGCag -5'
24347 5' -52.3 NC_005264.1 + 152825 0.67 0.979437
Target:  5'- gGUuCCGAAcGGCGCGggcuacggGGCUCGUCg -3'
miRNA:   3'- -CGcGGCUUaCUGCGUaca-----CUGAGCAG- -5'
24347 5' -52.3 NC_005264.1 + 33799 0.67 0.979437
Target:  5'- gGUuCCGAAcGGCGCGggcuacggGGCUCGUCg -3'
miRNA:   3'- -CGcGGCUUaCUGCGUaca-----CUGAGCAG- -5'
24347 5' -52.3 NC_005264.1 + 19426 0.66 0.981605
Target:  5'- gGCGCCGggUGugGCcgcggGGCgCGg- -3'
miRNA:   3'- -CGCGGCuuACugCGuaca-CUGaGCag -5'
24347 5' -52.3 NC_005264.1 + 109104 0.66 0.981605
Target:  5'- gGCGCCGGAgacgggcacGACGagacgGACUCGUUc -3'
miRNA:   3'- -CGCGGCUUa--------CUGCguacaCUGAGCAG- -5'
24347 5' -52.3 NC_005264.1 + 7429 0.66 0.983018
Target:  5'- uGCGCCGggUGGuCGCuaucgAUGUccaucugaggguccGGCgCGUCa -3'
miRNA:   3'- -CGCGGCuuACU-GCG-----UACA--------------CUGaGCAG- -5'
24347 5' -52.3 NC_005264.1 + 13457 0.66 0.983598
Target:  5'- gGCGCCGAAggGGCuccuGCGgg-GACUCGg- -3'
miRNA:   3'- -CGCGGCUUa-CUG----CGUacaCUGAGCag -5'
24347 5' -52.3 NC_005264.1 + 132484 0.66 0.983598
Target:  5'- gGCGCCGAAggGGCuccuGCGgg-GACUCGg- -3'
miRNA:   3'- -CGCGGCUUa-CUG----CGUacaCUGAGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.