miRNA display CGI


Results 41 - 60 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24348 5' -61.4 NC_005264.1 + 146270 0.69 0.498117
Target:  5'- aUGUGcGCCGcCGCCCC--GGCGCCGc- -3'
miRNA:   3'- gACAU-CGGC-GCGGGGagCUGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 128447 0.7 0.470638
Target:  5'- cCUGagcucgAGCCGCGCCCgUCuuuGGCGUCGg- -3'
miRNA:   3'- -GACa-----UCGGCGCGGGgAG---CUGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 87723 0.7 0.46165
Target:  5'- ---cGGCCauuugacuGCGCCCCagcUCGGCGCCGg- -3'
miRNA:   3'- gacaUCGG--------CGCGGGG---AGCUGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 2380 0.7 0.435246
Target:  5'- -aGUGGCCGuCGCCCgCaggagccCGGCGCCGg- -3'
miRNA:   3'- gaCAUCGGC-GCGGG-Ga------GCUGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 2757 0.7 0.42664
Target:  5'- ----cGgCGCGUCCCcCGGCGCCGUAc -3'
miRNA:   3'- gacauCgGCGCGGGGaGCUGCGGCAU- -5'
24348 5' -61.4 NC_005264.1 + 42194 0.71 0.401441
Target:  5'- uUGgAGCCGCGCCCaC-CGGCGucCCGUAu -3'
miRNA:   3'- gACaUCGGCGCGGG-GaGCUGC--GGCAU- -5'
24348 5' -61.4 NC_005264.1 + 140848 0.67 0.613718
Target:  5'- ----cGCCGCGCCUUUCGcuuGCGCCa-- -3'
miRNA:   3'- gacauCGGCGCGGGGAGC---UGCGGcau -5'
24348 5' -61.4 NC_005264.1 + 37338 0.67 0.62358
Target:  5'- --aUGGCCGCGCaCCC-CGAcguuCGCCGc- -3'
miRNA:   3'- gacAUCGGCGCG-GGGaGCU----GCGGCau -5'
24348 5' -61.4 NC_005264.1 + 98428 0.66 0.692375
Target:  5'- ----cGCCGUGCCCg-CGGCGUCGg- -3'
miRNA:   3'- gacauCGGCGCGGGgaGCUGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 69572 0.66 0.692375
Target:  5'- aCUGaAGCCGgGgCCCU-GGCGCCa-- -3'
miRNA:   3'- -GACaUCGGCgCgGGGAgCUGCGGcau -5'
24348 5' -61.4 NC_005264.1 + 104942 0.66 0.682625
Target:  5'- ---cAGCCGUGCCaagcgccgagCCUCGugGCCc-- -3'
miRNA:   3'- gacaUCGGCGCGG----------GGAGCugCGGcau -5'
24348 5' -61.4 NC_005264.1 + 45406 0.66 0.682625
Target:  5'- aUGgagGGCgGCGCCCUgCG-CGCCGc- -3'
miRNA:   3'- gACa--UCGgCGCGGGGaGCuGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 3428 0.66 0.672836
Target:  5'- -cGUagGGCCGCGCCCgcgcugCUCGcaaaGCGCCa-- -3'
miRNA:   3'- gaCA--UCGGCGCGGG------GAGC----UGCGGcau -5'
24348 5' -61.4 NC_005264.1 + 108228 0.66 0.663016
Target:  5'- -cGUGGCCGaUGUCCCgcaCG-CGCCGa- -3'
miRNA:   3'- gaCAUCGGC-GCGGGGa--GCuGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 58910 0.66 0.653173
Target:  5'- -cGgauGCCGC-CUCCUCGAUGgCGUAg -3'
miRNA:   3'- gaCau-CGGCGcGGGGAGCUGCgGCAU- -5'
24348 5' -61.4 NC_005264.1 + 15144 0.67 0.643314
Target:  5'- uCUGUcugcaccGCCGCGUCUCUgGACGaCCGa- -3'
miRNA:   3'- -GACAu------CGGCGCGGGGAgCUGC-GGCau -5'
24348 5' -61.4 NC_005264.1 + 85072 0.67 0.642328
Target:  5'- uCUGcGGCCGCGUCgucagauUCggauaCGGCGCCGUAg -3'
miRNA:   3'- -GACaUCGGCGCGG-------GGa----GCUGCGGCAU- -5'
24348 5' -61.4 NC_005264.1 + 107676 0.67 0.633447
Target:  5'- ---cAGCCGCGCCCa--GAgGCCGc- -3'
miRNA:   3'- gacaUCGGCGCGGGgagCUgCGGCau -5'
24348 5' -61.4 NC_005264.1 + 143995 0.67 0.633447
Target:  5'- -gGU-GCCGC-CCCCUCGAUGCa--- -3'
miRNA:   3'- gaCAuCGGCGcGGGGAGCUGCGgcau -5'
24348 5' -61.4 NC_005264.1 + 135382 0.67 0.62358
Target:  5'- aUGUccuuuGCUGCGCCgCUCGGCGCa--- -3'
miRNA:   3'- gACAu----CGGCGCGGgGAGCUGCGgcau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.