Results 41 - 60 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24348 | 5' | -61.4 | NC_005264.1 | + | 104942 | 0.66 | 0.682625 |
Target: 5'- ---cAGCCGUGCCaagcgccgagCCUCGugGCCc-- -3' miRNA: 3'- gacaUCGGCGCGG----------GGAGCugCGGcau -5' |
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24348 | 5' | -61.4 | NC_005264.1 | + | 107676 | 0.67 | 0.633447 |
Target: 5'- ---cAGCCGCGCCCa--GAgGCCGc- -3' miRNA: 3'- gacaUCGGCGCGGGgagCUgCGGCau -5' |
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24348 | 5' | -61.4 | NC_005264.1 | + | 108228 | 0.66 | 0.663016 |
Target: 5'- -cGUGGCCGaUGUCCCgcaCG-CGCCGa- -3' miRNA: 3'- gaCAUCGGC-GCGGGGa--GCuGCGGCau -5' |
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24348 | 5' | -61.4 | NC_005264.1 | + | 121017 | 0.68 | 0.555042 |
Target: 5'- ---gAGCCGCGCUCC-CGGCGauguaCGUGg -3' miRNA: 3'- gacaUCGGCGCGGGGaGCUGCg----GCAU- -5' |
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24348 | 5' | -61.4 | NC_005264.1 | + | 121407 | 0.7 | 0.435246 |
Target: 5'- -aGUGGCCGuCGCCCgCaggagccCGGCGCCGg- -3' miRNA: 3'- gaCAUCGGC-GCGGG-Ga------GCUGCGGCau -5' |
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24348 | 5' | -61.4 | NC_005264.1 | + | 121783 | 0.7 | 0.42664 |
Target: 5'- ----cGgCGCGUCCCcCGGCGCCGUAc -3' miRNA: 3'- gacauCgGCGCGGGGaGCUGCGGCAU- -5' |
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24348 | 5' | -61.4 | NC_005264.1 | + | 122455 | 0.66 | 0.672836 |
Target: 5'- -cGUagGGCCGCGCCCgcgcugCUCGcaaaGCGCCa-- -3' miRNA: 3'- gaCA--UCGGCGCGGG------GAGC----UGCGGcau -5' |
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24348 | 5' | -61.4 | NC_005264.1 | + | 128447 | 0.7 | 0.470638 |
Target: 5'- cCUGagcucgAGCCGCGCCCgUCuuuGGCGUCGg- -3' miRNA: 3'- -GACa-----UCGGCGCGGGgAG---CUGCGGCau -5' |
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24348 | 5' | -61.4 | NC_005264.1 | + | 133608 | 0.67 | 0.62358 |
Target: 5'- ----cGCUGUGCUCCUCGACcGCUGg- -3' miRNA: 3'- gacauCGGCGCGGGGAGCUG-CGGCau -5' |
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24348 | 5' | -61.4 | NC_005264.1 | + | 133721 | 0.67 | 0.59404 |
Target: 5'- gCUGccucUGGCCGacaGCCCUUgCGGCGCUGg- -3' miRNA: 3'- -GAC----AUCGGCg--CGGGGA-GCUGCGGCau -5' |
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24348 | 5' | -61.4 | NC_005264.1 | + | 135382 | 0.67 | 0.62358 |
Target: 5'- aUGUccuuuGCUGCGCCgCUCGGCGCa--- -3' miRNA: 3'- gACAu----CGGCGCGGgGAGCUGCGgcau -5' |
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24348 | 5' | -61.4 | NC_005264.1 | + | 136456 | 0.71 | 0.37721 |
Target: 5'- gCUGaGGCCGCGCUCagagaCGGCGCCGc- -3' miRNA: 3'- -GACaUCGGCGCGGGga---GCUGCGGCau -5' |
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24348 | 5' | -61.4 | NC_005264.1 | + | 140069 | 0.74 | 0.259278 |
Target: 5'- gUGUcGCCGCGCCCCUCauugccCGCCGc- -3' miRNA: 3'- gACAuCGGCGCGGGGAGcu----GCGGCau -5' |
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24348 | 5' | -61.4 | NC_005264.1 | + | 140848 | 0.67 | 0.613718 |
Target: 5'- ----cGCCGCGCCUUUCGcuuGCGCCa-- -3' miRNA: 3'- gacauCGGCGCGGGGAGC---UGCGGcau -5' |
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24348 | 5' | -61.4 | NC_005264.1 | + | 143995 | 0.67 | 0.633447 |
Target: 5'- -gGU-GCCGC-CCCCUCGAUGCa--- -3' miRNA: 3'- gaCAuCGGCGcGGGGAGCUGCGgcau -5' |
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24348 | 5' | -61.4 | NC_005264.1 | + | 145698 | 0.96 | 0.008662 |
Target: 5'- cCUGUAGCCGC-CCCCUCGACGCCGUAc -3' miRNA: 3'- -GACAUCGGCGcGGGGAGCUGCGGCAU- -5' |
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24348 | 5' | -61.4 | NC_005264.1 | + | 146270 | 0.69 | 0.498117 |
Target: 5'- aUGUGcGCCGcCGCCCC--GGCGCCGc- -3' miRNA: 3'- gACAU-CGGC-GCGGGGagCUGCGGCau -5' |
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24348 | 5' | -61.4 | NC_005264.1 | + | 151844 | 0.68 | 0.584237 |
Target: 5'- aCUGgGGCCGcCGCUCCggCGGCGacaCGUGg -3' miRNA: 3'- -GACaUCGGC-GCGGGGa-GCUGCg--GCAU- -5' |
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24348 | 5' | -61.4 | NC_005264.1 | + | 152304 | 0.68 | 0.545402 |
Target: 5'- -----uCCGCGCCCCUgagggCGGCGCCGc- -3' miRNA: 3'- gacaucGGCGCGGGGA-----GCUGCGGCau -5' |
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24348 | 5' | -61.4 | NC_005264.1 | + | 156193 | 0.68 | 0.584237 |
Target: 5'- uCUGccggAGCUuccggacauGUGCCCCcgCGugGCCGUGg -3' miRNA: 3'- -GACa---UCGG---------CGCGGGGa-GCugCGGCAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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