miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24348 5' -61.4 NC_005264.1 + 54329 0.66 0.702079
Target:  5'- -gGUGGUgGCGCa---CGACGCCGUAc -3'
miRNA:   3'- gaCAUCGgCGCGgggaGCUGCGGCAU- -5'
24348 5' -61.4 NC_005264.1 + 56963 0.68 0.545402
Target:  5'- gCUGUGGCgGCgacgaGUCCCUCGuCGCCc-- -3'
miRNA:   3'- -GACAUCGgCG-----CGGGGAGCuGCGGcau -5'
24348 5' -61.4 NC_005264.1 + 58910 0.66 0.653173
Target:  5'- -cGgauGCCGC-CUCCUCGAUGgCGUAg -3'
miRNA:   3'- gaCau-CGGCGcGGGGAGCUGCgGCAU- -5'
24348 5' -61.4 NC_005264.1 + 61441 0.74 0.247574
Target:  5'- ---cGGCC-CGCUCCUCGGCGCCGa- -3'
miRNA:   3'- gacaUCGGcGCGGGGAGCUGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 65945 0.68 0.584237
Target:  5'- ----uGCCGCG-CCCUCGcGCGCCGc- -3'
miRNA:   3'- gacauCGGCGCgGGGAGC-UGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 66602 0.7 0.443951
Target:  5'- gCUG-GGCUGCGCCgCguugcCGGCGCCGUc -3'
miRNA:   3'- -GACaUCGGCGCGGgGa----GCUGCGGCAu -5'
24348 5' -61.4 NC_005264.1 + 67384 0.67 0.62358
Target:  5'- ----cGCUGCGCCCgC-CGGCGCgGUAg -3'
miRNA:   3'- gacauCGGCGCGGG-GaGCUGCGgCAU- -5'
24348 5' -61.4 NC_005264.1 + 68315 0.67 0.62358
Target:  5'- -cGgcGCCGCuGCCCUcccaCGugGCCGa- -3'
miRNA:   3'- gaCauCGGCG-CGGGGa---GCugCGGCau -5'
24348 5' -61.4 NC_005264.1 + 69572 0.66 0.692375
Target:  5'- aCUGaAGCCGgGgCCCU-GGCGCCa-- -3'
miRNA:   3'- -GACaUCGGCgCgGGGAgCUGCGGcau -5'
24348 5' -61.4 NC_005264.1 + 82207 0.69 0.479714
Target:  5'- -cGUGGCCGCGCguccaucgUCCUCGGgGCCc-- -3'
miRNA:   3'- gaCAUCGGCGCG--------GGGAGCUgCGGcau -5'
24348 5' -61.4 NC_005264.1 + 85072 0.67 0.642328
Target:  5'- uCUGcGGCCGCGUCgucagauUCggauaCGGCGCCGUAg -3'
miRNA:   3'- -GACaUCGGCGCGG-------GGa----GCUGCGGCAU- -5'
24348 5' -61.4 NC_005264.1 + 85101 0.7 0.42664
Target:  5'- -gGUGGCCGgcgaGUCCCUCGGCGCa--- -3'
miRNA:   3'- gaCAUCGGCg---CGGGGAGCUGCGgcau -5'
24348 5' -61.4 NC_005264.1 + 85412 0.67 0.633447
Target:  5'- -aGUGGUCGCGaaccaCCCUC-ACGUCGUc -3'
miRNA:   3'- gaCAUCGGCGCg----GGGAGcUGCGGCAu -5'
24348 5' -61.4 NC_005264.1 + 87723 0.7 0.46165
Target:  5'- ---cGGCCauuugacuGCGCCCCagcUCGGCGCCGg- -3'
miRNA:   3'- gacaUCGG--------CGCGGGG---AGCUGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 92649 0.67 0.633447
Target:  5'- ----uGCCGCGUggCCCUCG-CGCCGc- -3'
miRNA:   3'- gacauCGGCGCG--GGGAGCuGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 93800 0.66 0.692375
Target:  5'- ---cGGCCGCGgCCaagagaUCGAcuCGCCGUGg -3'
miRNA:   3'- gacaUCGGCGCgGGg-----AGCU--GCGGCAU- -5'
24348 5' -61.4 NC_005264.1 + 96148 0.67 0.603869
Target:  5'- -cGUAGUaCGCcCCCCgccCGGCGCCGg- -3'
miRNA:   3'- gaCAUCG-GCGcGGGGa--GCUGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 98428 0.66 0.692375
Target:  5'- ----cGCCGUGCCCg-CGGCGUCGg- -3'
miRNA:   3'- gacauCGGCGCGGGgaGCUGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 100151 0.67 0.59404
Target:  5'- -gGUAGCaCGCGUUCUUCGcgcugACGCCGa- -3'
miRNA:   3'- gaCAUCG-GCGCGGGGAGC-----UGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 103260 0.67 0.593058
Target:  5'- -aGUGGCCuucuucuGCGCggagguccuaagCCC-CGACGCCGUGc -3'
miRNA:   3'- gaCAUCGG-------CGCG------------GGGaGCUGCGGCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.