miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24348 5' -61.4 NC_005264.1 + 96148 0.67 0.603869
Target:  5'- -cGUAGUaCGCcCCCCgccCGGCGCCGg- -3'
miRNA:   3'- gaCAUCG-GCGcGGGGa--GCUGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 133721 0.67 0.59404
Target:  5'- gCUGccucUGGCCGacaGCCCUUgCGGCGCUGg- -3'
miRNA:   3'- -GAC----AUCGGCg--CGGGGA-GCUGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 85072 0.67 0.642328
Target:  5'- uCUGcGGCCGCGUCgucagauUCggauaCGGCGCCGUAg -3'
miRNA:   3'- -GACaUCGGCGCGG-------GGa----GCUGCGGCAU- -5'
24348 5' -61.4 NC_005264.1 + 143995 0.67 0.633447
Target:  5'- -gGU-GCCGC-CCCCUCGAUGCa--- -3'
miRNA:   3'- gaCAuCGGCGcGGGGAGCUGCGgcau -5'
24348 5' -61.4 NC_005264.1 + 107676 0.67 0.633447
Target:  5'- ---cAGCCGCGCCCa--GAgGCCGc- -3'
miRNA:   3'- gacaUCGGCGCGGGgagCUgCGGCau -5'
24348 5' -61.4 NC_005264.1 + 37338 0.67 0.62358
Target:  5'- --aUGGCCGCGCaCCC-CGAcguuCGCCGc- -3'
miRNA:   3'- gacAUCGGCGCG-GGGaGCU----GCGGCau -5'
24348 5' -61.4 NC_005264.1 + 100151 0.67 0.59404
Target:  5'- -gGUAGCaCGCGUUCUUCGcgcugACGCCGa- -3'
miRNA:   3'- gaCAUCG-GCGCGGGGAGC-----UGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 135382 0.67 0.62358
Target:  5'- aUGUccuuuGCUGCGCCgCUCGGCGCa--- -3'
miRNA:   3'- gACAu----CGGCGCGGgGAGCUGCGgcau -5'
24348 5' -61.4 NC_005264.1 + 15144 0.67 0.643314
Target:  5'- uCUGUcugcaccGCCGCGUCUCUgGACGaCCGa- -3'
miRNA:   3'- -GACAu------CGGCGCGGGGAgCUGC-GGCau -5'
24348 5' -61.4 NC_005264.1 + 68315 0.67 0.62358
Target:  5'- -cGgcGCCGCuGCCCUcccaCGugGCCGa- -3'
miRNA:   3'- gaCauCGGCG-CGGGGa---GCugCGGCau -5'
24348 5' -61.4 NC_005264.1 + 103260 0.67 0.593058
Target:  5'- -aGUGGCCuucuucuGCGCggagguccuaagCCC-CGACGCCGUGc -3'
miRNA:   3'- gaCAUCGG-------CGCG------------GGGaGCUGCGGCAU- -5'
24348 5' -61.4 NC_005264.1 + 65945 0.68 0.584237
Target:  5'- ----uGCCGCG-CCCUCGcGCGCCGc- -3'
miRNA:   3'- gacauCGGCGCgGGGAGC-UGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 30820 0.68 0.584237
Target:  5'- ---gAGUCGCGUCCCUaaaacguaaucUGGCGCCGg- -3'
miRNA:   3'- gacaUCGGCGCGGGGA-----------GCUGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 156193 0.68 0.584237
Target:  5'- uCUGccggAGCUuccggacauGUGCCCCcgCGugGCCGUGg -3'
miRNA:   3'- -GACa---UCGG---------CGCGGGGa-GCugCGGCAU- -5'
24348 5' -61.4 NC_005264.1 + 41027 0.68 0.574465
Target:  5'- gCUGU-GCCuuccacGUGCCCCUCcuaacguauugGGCGCCGUc -3'
miRNA:   3'- -GACAuCGG------CGCGGGGAG-----------CUGCGGCAu -5'
24348 5' -61.4 NC_005264.1 + 52940 0.68 0.574465
Target:  5'- --aUGGCCGCGCCCg-CGGCGCa--- -3'
miRNA:   3'- gacAUCGGCGCGGGgaGCUGCGgcau -5'
24348 5' -61.4 NC_005264.1 + 27995 0.68 0.535817
Target:  5'- -cGUAGCCGCGgCCCaUCGAUccagGUCGg- -3'
miRNA:   3'- gaCAUCGGCGCgGGG-AGCUG----CGGCau -5'
24348 5' -61.4 NC_005264.1 + 159967 0.68 0.574465
Target:  5'- ----cGCCGCGCCCCggUCGAUcgcaGCCGc- -3'
miRNA:   3'- gacauCGGCGCGGGG--AGCUG----CGGCau -5'
24348 5' -61.4 NC_005264.1 + 152304 0.68 0.545402
Target:  5'- -----uCCGCGCCCCUgagggCGGCGCCGc- -3'
miRNA:   3'- gacaucGGCGCGGGGA-----GCUGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 56963 0.68 0.545402
Target:  5'- gCUGUGGCgGCgacgaGUCCCUCGuCGCCc-- -3'
miRNA:   3'- -GACAUCGgCG-----CGGGGAGCuGCGGcau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.