Results 21 - 40 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24348 | 5' | -61.4 | NC_005264.1 | + | 108228 | 0.66 | 0.663016 |
Target: 5'- -cGUGGCCGaUGUCCCgcaCG-CGCCGa- -3' miRNA: 3'- gaCAUCGGC-GCGGGGa--GCuGCGGCau -5' |
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24348 | 5' | -61.4 | NC_005264.1 | + | 107676 | 0.67 | 0.633447 |
Target: 5'- ---cAGCCGCGCCCa--GAgGCCGc- -3' miRNA: 3'- gacaUCGGCGCGGGgagCUgCGGCau -5' |
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24348 | 5' | -61.4 | NC_005264.1 | + | 104942 | 0.66 | 0.682625 |
Target: 5'- ---cAGCCGUGCCaagcgccgagCCUCGugGCCc-- -3' miRNA: 3'- gacaUCGGCGCGG----------GGAGCugCGGcau -5' |
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24348 | 5' | -61.4 | NC_005264.1 | + | 103260 | 0.67 | 0.593058 |
Target: 5'- -aGUGGCCuucuucuGCGCggagguccuaagCCC-CGACGCCGUGc -3' miRNA: 3'- gaCAUCGG-------CGCG------------GGGaGCUGCGGCAU- -5' |
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24348 | 5' | -61.4 | NC_005264.1 | + | 100151 | 0.67 | 0.59404 |
Target: 5'- -gGUAGCaCGCGUUCUUCGcgcugACGCCGa- -3' miRNA: 3'- gaCAUCG-GCGCGGGGAGC-----UGCGGCau -5' |
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24348 | 5' | -61.4 | NC_005264.1 | + | 98428 | 0.66 | 0.692375 |
Target: 5'- ----cGCCGUGCCCg-CGGCGUCGg- -3' miRNA: 3'- gacauCGGCGCGGGgaGCUGCGGCau -5' |
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24348 | 5' | -61.4 | NC_005264.1 | + | 96148 | 0.67 | 0.603869 |
Target: 5'- -cGUAGUaCGCcCCCCgccCGGCGCCGg- -3' miRNA: 3'- gaCAUCG-GCGcGGGGa--GCUGCGGCau -5' |
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24348 | 5' | -61.4 | NC_005264.1 | + | 93800 | 0.66 | 0.692375 |
Target: 5'- ---cGGCCGCGgCCaagagaUCGAcuCGCCGUGg -3' miRNA: 3'- gacaUCGGCGCgGGg-----AGCU--GCGGCAU- -5' |
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24348 | 5' | -61.4 | NC_005264.1 | + | 92649 | 0.67 | 0.633447 |
Target: 5'- ----uGCCGCGUggCCCUCG-CGCCGc- -3' miRNA: 3'- gacauCGGCGCG--GGGAGCuGCGGCau -5' |
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24348 | 5' | -61.4 | NC_005264.1 | + | 87723 | 0.7 | 0.46165 |
Target: 5'- ---cGGCCauuugacuGCGCCCCagcUCGGCGCCGg- -3' miRNA: 3'- gacaUCGG--------CGCGGGG---AGCUGCGGCau -5' |
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24348 | 5' | -61.4 | NC_005264.1 | + | 85412 | 0.67 | 0.633447 |
Target: 5'- -aGUGGUCGCGaaccaCCCUC-ACGUCGUc -3' miRNA: 3'- gaCAUCGGCGCg----GGGAGcUGCGGCAu -5' |
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24348 | 5' | -61.4 | NC_005264.1 | + | 85101 | 0.7 | 0.42664 |
Target: 5'- -gGUGGCCGgcgaGUCCCUCGGCGCa--- -3' miRNA: 3'- gaCAUCGGCg---CGGGGAGCUGCGgcau -5' |
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24348 | 5' | -61.4 | NC_005264.1 | + | 85072 | 0.67 | 0.642328 |
Target: 5'- uCUGcGGCCGCGUCgucagauUCggauaCGGCGCCGUAg -3' miRNA: 3'- -GACaUCGGCGCGG-------GGa----GCUGCGGCAU- -5' |
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24348 | 5' | -61.4 | NC_005264.1 | + | 82207 | 0.69 | 0.479714 |
Target: 5'- -cGUGGCCGCGCguccaucgUCCUCGGgGCCc-- -3' miRNA: 3'- gaCAUCGGCGCG--------GGGAGCUgCGGcau -5' |
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24348 | 5' | -61.4 | NC_005264.1 | + | 69572 | 0.66 | 0.692375 |
Target: 5'- aCUGaAGCCGgGgCCCU-GGCGCCa-- -3' miRNA: 3'- -GACaUCGGCgCgGGGAgCUGCGGcau -5' |
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24348 | 5' | -61.4 | NC_005264.1 | + | 68315 | 0.67 | 0.62358 |
Target: 5'- -cGgcGCCGCuGCCCUcccaCGugGCCGa- -3' miRNA: 3'- gaCauCGGCG-CGGGGa---GCugCGGCau -5' |
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24348 | 5' | -61.4 | NC_005264.1 | + | 67384 | 0.67 | 0.62358 |
Target: 5'- ----cGCUGCGCCCgC-CGGCGCgGUAg -3' miRNA: 3'- gacauCGGCGCGGG-GaGCUGCGgCAU- -5' |
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24348 | 5' | -61.4 | NC_005264.1 | + | 66602 | 0.7 | 0.443951 |
Target: 5'- gCUG-GGCUGCGCCgCguugcCGGCGCCGUc -3' miRNA: 3'- -GACaUCGGCGCGGgGa----GCUGCGGCAu -5' |
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24348 | 5' | -61.4 | NC_005264.1 | + | 65945 | 0.68 | 0.584237 |
Target: 5'- ----uGCCGCG-CCCUCGcGCGCCGc- -3' miRNA: 3'- gacauCGGCGCgGGGAGC-UGCGGCau -5' |
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24348 | 5' | -61.4 | NC_005264.1 | + | 61441 | 0.74 | 0.247574 |
Target: 5'- ---cGGCC-CGCUCCUCGGCGCCGa- -3' miRNA: 3'- gacaUCGGcGCGGGGAGCUGCGGCau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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