miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24348 5' -61.4 NC_005264.1 + 161221 0.71 0.401441
Target:  5'- uUGgAGCCGCGCCCaC-CGGCGucCCGUAu -3'
miRNA:   3'- gACaUCGGCGCGGG-GaGCUGC--GGCAU- -5'
24348 5' -61.4 NC_005264.1 + 159967 0.68 0.574465
Target:  5'- ----cGCCGCGCCCCggUCGAUcgcaGCCGc- -3'
miRNA:   3'- gacauCGGCGCGGGG--AGCUG----CGGCau -5'
24348 5' -61.4 NC_005264.1 + 156365 0.67 0.62358
Target:  5'- --aUGGCCGCGCaCCC-CGAcguuCGCCGc- -3'
miRNA:   3'- gacAUCGGCGCG-GGGaGCU----GCGGCau -5'
24348 5' -61.4 NC_005264.1 + 156193 0.68 0.584237
Target:  5'- uCUGccggAGCUuccggacauGUGCCCCcgCGugGCCGUGg -3'
miRNA:   3'- -GACa---UCGG---------CGCGGGGa-GCugCGGCAU- -5'
24348 5' -61.4 NC_005264.1 + 152304 0.68 0.545402
Target:  5'- -----uCCGCGCCCCUgagggCGGCGCCGc- -3'
miRNA:   3'- gacaucGGCGCGGGGA-----GCUGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 151844 0.68 0.584237
Target:  5'- aCUGgGGCCGcCGCUCCggCGGCGacaCGUGg -3'
miRNA:   3'- -GACaUCGGC-GCGGGGa-GCUGCg--GCAU- -5'
24348 5' -61.4 NC_005264.1 + 146270 0.69 0.498117
Target:  5'- aUGUGcGCCGcCGCCCC--GGCGCCGc- -3'
miRNA:   3'- gACAU-CGGC-GCGGGGagCUGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 145698 0.96 0.008662
Target:  5'- cCUGUAGCCGC-CCCCUCGACGCCGUAc -3'
miRNA:   3'- -GACAUCGGCGcGGGGAGCUGCGGCAU- -5'
24348 5' -61.4 NC_005264.1 + 143995 0.67 0.633447
Target:  5'- -gGU-GCCGC-CCCCUCGAUGCa--- -3'
miRNA:   3'- gaCAuCGGCGcGGGGAGCUGCGgcau -5'
24348 5' -61.4 NC_005264.1 + 140848 0.67 0.613718
Target:  5'- ----cGCCGCGCCUUUCGcuuGCGCCa-- -3'
miRNA:   3'- gacauCGGCGCGGGGAGC---UGCGGcau -5'
24348 5' -61.4 NC_005264.1 + 140069 0.74 0.259278
Target:  5'- gUGUcGCCGCGCCCCUCauugccCGCCGc- -3'
miRNA:   3'- gACAuCGGCGCGGGGAGcu----GCGGCau -5'
24348 5' -61.4 NC_005264.1 + 136456 0.71 0.37721
Target:  5'- gCUGaGGCCGCGCUCagagaCGGCGCCGc- -3'
miRNA:   3'- -GACaUCGGCGCGGGga---GCUGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 135382 0.67 0.62358
Target:  5'- aUGUccuuuGCUGCGCCgCUCGGCGCa--- -3'
miRNA:   3'- gACAu----CGGCGCGGgGAGCUGCGgcau -5'
24348 5' -61.4 NC_005264.1 + 133721 0.67 0.59404
Target:  5'- gCUGccucUGGCCGacaGCCCUUgCGGCGCUGg- -3'
miRNA:   3'- -GAC----AUCGGCg--CGGGGA-GCUGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 133608 0.67 0.62358
Target:  5'- ----cGCUGUGCUCCUCGACcGCUGg- -3'
miRNA:   3'- gacauCGGCGCGGGGAGCUG-CGGCau -5'
24348 5' -61.4 NC_005264.1 + 128447 0.7 0.470638
Target:  5'- cCUGagcucgAGCCGCGCCCgUCuuuGGCGUCGg- -3'
miRNA:   3'- -GACa-----UCGGCGCGGGgAG---CUGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 122455 0.66 0.672836
Target:  5'- -cGUagGGCCGCGCCCgcgcugCUCGcaaaGCGCCa-- -3'
miRNA:   3'- gaCA--UCGGCGCGGG------GAGC----UGCGGcau -5'
24348 5' -61.4 NC_005264.1 + 121783 0.7 0.42664
Target:  5'- ----cGgCGCGUCCCcCGGCGCCGUAc -3'
miRNA:   3'- gacauCgGCGCGGGGaGCUGCGGCAU- -5'
24348 5' -61.4 NC_005264.1 + 121407 0.7 0.435246
Target:  5'- -aGUGGCCGuCGCCCgCaggagccCGGCGCCGg- -3'
miRNA:   3'- gaCAUCGGC-GCGGG-Ga------GCUGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 121017 0.68 0.555042
Target:  5'- ---gAGCCGCGCUCC-CGGCGauguaCGUGg -3'
miRNA:   3'- gacaUCGGCGCGGGGaGCUGCg----GCAU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.