miRNA display CGI


Results 61 - 80 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24349 3' -64.4 NC_005264.1 + 36816 0.71 0.295016
Target:  5'- --aGCCGCCGCgGGCcacGCCGaGGAGGa -3'
miRNA:   3'- gcgCGGCGGCGgUCGa--CGGCgCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 37361 0.76 0.143459
Target:  5'- cCGCGCCGCCgaggaguucuccGCCAGCgacgccGCCGCGaGAGu -3'
miRNA:   3'- -GCGCGGCGG------------CGGUCGa-----CGGCGC-CUUc -5'
24349 3' -64.4 NC_005264.1 + 37547 0.66 0.527059
Target:  5'- aGCGUCaGgCGaagcgaCAGCgcgccGCCGCGGAGGg -3'
miRNA:   3'- gCGCGG-CgGCg-----GUCGa----CGGCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 37866 0.68 0.437755
Target:  5'- uGCGCCGCUGCC--CUGC-GCGaGggGu -3'
miRNA:   3'- gCGCGGCGGCGGucGACGgCGC-CuuC- -5'
24349 3' -64.4 NC_005264.1 + 37996 0.69 0.395664
Target:  5'- gGCGgccaCCGCCGCCGGaCUauugaacGCCGUGGGc- -3'
miRNA:   3'- gCGC----GGCGGCGGUC-GA-------CGGCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 39207 0.76 0.13335
Target:  5'- aCGCGCCuacGCCGCCGcggcGCUGgCGgGGAGGg -3'
miRNA:   3'- -GCGCGG---CGGCGGU----CGACgGCgCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 39476 0.7 0.342323
Target:  5'- gCGCGCUcaGCCGCCAggggcaggccugcGCUGUgGUGGAc- -3'
miRNA:   3'- -GCGCGG--CGGCGGU-------------CGACGgCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 39732 0.67 0.481404
Target:  5'- cCGCGaCGCCGCCcgugcaacAGCcccGCUGuCGGGAGa -3'
miRNA:   3'- -GCGCgGCGGCGG--------UCGa--CGGC-GCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 39832 0.67 0.476052
Target:  5'- uGUGCCGCCcugcuuggcgguaaaGCCGGCcGgCGCGGccAGGa -3'
miRNA:   3'- gCGCGGCGG---------------CGGUCGaCgGCGCC--UUC- -5'
24349 3' -64.4 NC_005264.1 + 40660 0.68 0.437755
Target:  5'- aGgGUCGCCGUuuCGGUUGCCGCcaGGAc- -3'
miRNA:   3'- gCgCGGCGGCG--GUCGACGGCG--CCUuc -5'
24349 3' -64.4 NC_005264.1 + 40741 0.71 0.288598
Target:  5'- uCG-GCCGCCGCCAGUcGCgGCGaGAc- -3'
miRNA:   3'- -GCgCGGCGGCGGUCGaCGgCGC-CUuc -5'
24349 3' -64.4 NC_005264.1 + 40787 0.7 0.328769
Target:  5'- cCGCGgCGCCGagAGCggagccgcuUGCCGCGGGGu -3'
miRNA:   3'- -GCGCgGCGGCggUCG---------ACGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 42132 0.66 0.536391
Target:  5'- cCGC-CCGaCCGCCGGCuuUGUCgGCGcGAGGc -3'
miRNA:   3'- -GCGcGGC-GGCGGUCG--ACGG-CGC-CUUC- -5'
24349 3' -64.4 NC_005264.1 + 42265 0.68 0.437755
Target:  5'- gGC-CCGCCuauuGCCGGCgcggucaacGCCGCGGGGc -3'
miRNA:   3'- gCGcGGCGG----CGGUCGa--------CGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 42371 0.7 0.343047
Target:  5'- --gGCCGgUGCUGGCUcCCGCGGAGGc -3'
miRNA:   3'- gcgCGGCgGCGGUCGAcGGCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 43187 0.72 0.264023
Target:  5'- uCGCGCUGCCuGCgAcGCggGCCGgCGGggGg -3'
miRNA:   3'- -GCGCGGCGG-CGgU-CGa-CGGC-GCCuuC- -5'
24349 3' -64.4 NC_005264.1 + 43668 0.77 0.117949
Target:  5'- gCGCGCUGCgCGCCGGCguuaaggcgGCCGCcgGGGAGc -3'
miRNA:   3'- -GCGCGGCG-GCGGUCGa--------CGGCG--CCUUC- -5'
24349 3' -64.4 NC_005264.1 + 43830 0.67 0.472501
Target:  5'- gCGCGCaaccuGCgGUUauaaagaagggGGCUGCCGCGGGGa -3'
miRNA:   3'- -GCGCGg----CGgCGG-----------UCGACGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 46407 0.68 0.402093
Target:  5'- uCGCccCCGCgGCCAGacgcccccagcgacCUGCCGCGGGc- -3'
miRNA:   3'- -GCGc-GGCGgCGGUC--------------GACGGCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 49587 0.73 0.200427
Target:  5'- gGCGCaCGCCGCCGGCgaccagGaCGaCGGggGg -3'
miRNA:   3'- gCGCG-GCGGCGGUCGa-----CgGC-GCCuuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.