miRNA display CGI


Results 41 - 60 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24349 3' -64.4 NC_005264.1 + 27871 0.68 0.42094
Target:  5'- uGCGCCGCCGCCuuuUUGUCGUGu--- -3'
miRNA:   3'- gCGCGGCGGCGGuc-GACGGCGCcuuc -5'
24349 3' -64.4 NC_005264.1 + 28045 0.68 0.437755
Target:  5'- gCGCGCgCGaCGCCGGgUaaaaGCgCGCGGAAGc -3'
miRNA:   3'- -GCGCG-GCgGCGGUCgA----CG-GCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 29460 0.66 0.527059
Target:  5'- uGCGCCGCCGCgAuGaCUcucGCCGagucgucgaGGAGGg -3'
miRNA:   3'- gCGCGGCGGCGgU-C-GA---CGGCg--------CCUUC- -5'
24349 3' -64.4 NC_005264.1 + 30375 0.71 0.276092
Target:  5'- gGCGCCGCCGCgucgcgucuCGGCgGCgGCGGu-- -3'
miRNA:   3'- gCGCGGCGGCG---------GUCGaCGgCGCCuuc -5'
24349 3' -64.4 NC_005264.1 + 30409 0.77 0.112266
Target:  5'- gCGCGCCGgUGCggagAGCUGCgGCGGAGGa -3'
miRNA:   3'- -GCGCGGCgGCGg---UCGACGgCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 30843 0.68 0.437755
Target:  5'- uCGCGUCGUCGUCGGCggcggcgcGCCGCccGGuAGg -3'
miRNA:   3'- -GCGCGGCGGCGGUCGa-------CGGCG--CCuUC- -5'
24349 3' -64.4 NC_005264.1 + 31033 0.66 0.554274
Target:  5'- gGUGCCGCCuaGCggucgugCGGCUGCguUGCGGAc- -3'
miRNA:   3'- gCGCGGCGG--CG-------GUCGACG--GCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 31120 0.66 0.564708
Target:  5'- aGCGCCacgagCGCCAGCaacGCCGCGcAGGc -3'
miRNA:   3'- gCGCGGcg---GCGGUCGa--CGGCGCcUUC- -5'
24349 3' -64.4 NC_005264.1 + 31173 0.66 0.536391
Target:  5'- aCGUGCCGCCaaCGGUcugGCgGCGGGc- -3'
miRNA:   3'- -GCGCGGCGGcgGUCGa--CGgCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 31248 0.7 0.353305
Target:  5'- gCGCGCCGCuCccuccacaccuaggcGCCAGgUGCCGCGcacaugcaGAAGc -3'
miRNA:   3'- -GCGCGGCG-G---------------CGGUCgACGGCGC--------CUUC- -5'
24349 3' -64.4 NC_005264.1 + 32020 0.66 0.55522
Target:  5'- uGCGgaaCCGCCuCgGGCUGCCcCGGAGu -3'
miRNA:   3'- gCGC---GGCGGcGgUCGACGGcGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 33849 0.71 0.270003
Target:  5'- gCGCGCCGCgGCagAGCUGaagaaCGUGGAGc -3'
miRNA:   3'- -GCGCGGCGgCGg-UCGACg----GCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 33901 0.7 0.327366
Target:  5'- aGCGCgagauagCGCCGCCuuuCUGCCGCcaggcugGGAAGg -3'
miRNA:   3'- gCGCG-------GCGGCGGuc-GACGGCG-------CCUUC- -5'
24349 3' -64.4 NC_005264.1 + 34169 0.67 0.508584
Target:  5'- cCGCGCCcugcagucacaGCUGCuggaCAGCaGCCGCGGcauGGa -3'
miRNA:   3'- -GCGCGG-----------CGGCG----GUCGaCGGCGCCu--UC- -5'
24349 3' -64.4 NC_005264.1 + 34262 0.69 0.379886
Target:  5'- gCGCGCgGuaauCCGCguGCUgcgcuccGCCGCGGAAa -3'
miRNA:   3'- -GCGCGgC----GGCGguCGA-------CGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 34752 0.71 0.28229
Target:  5'- gCGCGCCgGUCGCC-GCUGUCGCuacacGAAGa -3'
miRNA:   3'- -GCGCGG-CGGCGGuCGACGGCGc----CUUC- -5'
24349 3' -64.4 NC_005264.1 + 34989 0.86 0.028419
Target:  5'- gCGCGCCGgguucuagaCCGCCGGCcGCCGCGGAGGc -3'
miRNA:   3'- -GCGCGGC---------GGCGGUCGaCGGCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 36073 0.66 0.536391
Target:  5'- aCGUGCUGCCGUC-GCUGUcccucucuucggCGCGGcuGg -3'
miRNA:   3'- -GCGCGGCGGCGGuCGACG------------GCGCCuuC- -5'
24349 3' -64.4 NC_005264.1 + 36306 0.69 0.396464
Target:  5'- gGaCGUCGUCGCUAucGCUGCCGUaGAGGa -3'
miRNA:   3'- gC-GCGGCGGCGGU--CGACGGCGcCUUC- -5'
24349 3' -64.4 NC_005264.1 + 36766 0.7 0.343047
Target:  5'- gGCGCCGUCGCCGcUUGCgCGCaGAAu -3'
miRNA:   3'- gCGCGGCGGCGGUcGACG-GCGcCUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.