miRNA display CGI


Results 41 - 60 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24349 3' -64.4 NC_005264.1 + 29460 0.66 0.527059
Target:  5'- uGCGCCGCCGCgAuGaCUcucGCCGagucgucgaGGAGGg -3'
miRNA:   3'- gCGCGGCGGCGgU-C-GA---CGGCg--------CCUUC- -5'
24349 3' -64.4 NC_005264.1 + 124855 0.66 0.527059
Target:  5'- gGCgGUgGCCGCCAcucGCcugGCCGCGGu-- -3'
miRNA:   3'- gCG-CGgCGGCGGU---CGa--CGGCGCCuuc -5'
24349 3' -64.4 NC_005264.1 + 104578 0.66 0.52149
Target:  5'- aGCGCCauGCCGCCcacgggaucgggccgAGUgaGCaGCGGAAGg -3'
miRNA:   3'- gCGCGG--CGGCGG---------------UCGa-CGgCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 37547 0.66 0.527059
Target:  5'- aGCGUCaGgCGaagcgaCAGCgcgccGCCGCGGAGGg -3'
miRNA:   3'- gCGCGG-CgGCg-----GUCGa----CGGCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 138439 0.66 0.517789
Target:  5'- uCGCGCUGCuCGCgAucuaccucGCcGCCGgGGGAGc -3'
miRNA:   3'- -GCGCGGCG-GCGgU--------CGaCGGCgCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 125258 0.67 0.508584
Target:  5'- cCGCgGCCGCCGCgAGacuUGCCGCc---- -3'
miRNA:   3'- -GCG-CGGCGGCGgUCg--ACGGCGccuuc -5'
24349 3' -64.4 NC_005264.1 + 13889 0.67 0.481404
Target:  5'- aCGCGUCGUCGCCuGCaGgCGaCGGGGc -3'
miRNA:   3'- -GCGCGGCGGCGGuCGaCgGC-GCCUUc -5'
24349 3' -64.4 NC_005264.1 + 129565 0.67 0.481404
Target:  5'- gGCGCCGCCcUCAGg-GgCGCGGAu- -3'
miRNA:   3'- gCGCGGCGGcGGUCgaCgGCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 116419 0.67 0.463681
Target:  5'- cCGCGgCagGUCGCUgggGGCgucugGCCGCGGggGc -3'
miRNA:   3'- -GCGCgG--CGGCGG---UCGa----CGGCGCCuuC- -5'
24349 3' -64.4 NC_005264.1 + 92989 0.67 0.481404
Target:  5'- aCGCGCCGCaGCacgCGGCcGuaGCGGggGc -3'
miRNA:   3'- -GCGCGGCGgCG---GUCGaCggCGCCuuC- -5'
24349 3' -64.4 NC_005264.1 + 124563 0.67 0.484988
Target:  5'- aCGuCGCCGCCGuCCGGgaCUGacgucaccgacagcaCCGCGGAc- -3'
miRNA:   3'- -GC-GCGGCGGC-GGUC--GAC---------------GGCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 100584 0.67 0.508584
Target:  5'- aGCGCCGUCGUuguaCAGcCUGUgGCGGc-- -3'
miRNA:   3'- gCGCGGCGGCG----GUC-GACGgCGCCuuc -5'
24349 3' -64.4 NC_005264.1 + 34169 0.67 0.508584
Target:  5'- cCGCGCCcugcagucacaGCUGCuggaCAGCaGCCGCGGcauGGa -3'
miRNA:   3'- -GCGCGG-----------CGGCG----GUCGaCGGCGCCu--UC- -5'
24349 3' -64.4 NC_005264.1 + 146774 0.67 0.49945
Target:  5'- aGCGCCGCgCGgCGGUucucggUGCgGCGGuguGGa -3'
miRNA:   3'- gCGCGGCG-GCgGUCG------ACGgCGCCu--UC- -5'
24349 3' -64.4 NC_005264.1 + 95368 0.67 0.49945
Target:  5'- gGCGCgUGCCGCCAaaCUGCCaggcGUGGGAc -3'
miRNA:   3'- gCGCG-GCGGCGGUc-GACGG----CGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 158858 0.67 0.476052
Target:  5'- uGUGCCGCCcugcuuggcgguaaaGCCGGCcGgCGCGGccAGGa -3'
miRNA:   3'- gCGCGGCGG---------------CGGUCGaCgGCGCC--UUC- -5'
24349 3' -64.4 NC_005264.1 + 158758 0.67 0.481404
Target:  5'- cCGCGaCGCCGCCcgugcaacAGCcccGCUGuCGGGAGa -3'
miRNA:   3'- -GCGCgGCGGCGG--------UCGa--CGGC-GCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 126077 0.67 0.481404
Target:  5'- gCGCGCaagcggcgacggCGCCgGCCGGCgccgucgcGCUGCGGGGa -3'
miRNA:   3'- -GCGCG------------GCGG-CGGUCGa-------CGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 124463 0.67 0.490388
Target:  5'- gGCGUCGCCGCU--CUcGCCGgaGGAGGu -3'
miRNA:   3'- gCGCGGCGGCGGucGA-CGGCg-CCUUC- -5'
24349 3' -64.4 NC_005264.1 + 122624 0.67 0.490388
Target:  5'- gCGCGaagaauuaCCGCCGCgGGggGCCGC-GAGGg -3'
miRNA:   3'- -GCGC--------GGCGGCGgUCgaCGGCGcCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.