miRNA display CGI


Results 41 - 60 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24349 3' -64.4 NC_005264.1 + 55905 0.72 0.241174
Target:  5'- uGCgGCCGCCG-CAGCUGUCGaGGAAa -3'
miRNA:   3'- gCG-CGGCGGCgGUCGACGGCgCCUUc -5'
24349 3' -64.4 NC_005264.1 + 121426 0.72 0.246727
Target:  5'- aGC-CCGgCGCCGGcCUGCCuaGGAAGa -3'
miRNA:   3'- gCGcGGCgGCGGUC-GACGGcgCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 2399 0.72 0.246727
Target:  5'- aGC-CCGgCGCCGGcCUGCCuaGGAAGa -3'
miRNA:   3'- gCGcGGCgGCGGUC-GACGGcgCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 13264 0.72 0.246727
Target:  5'- aGCaGCCccccuCCGCCcggGGCUGuCCGCGGGAGa -3'
miRNA:   3'- gCG-CGGc----GGCGG---UCGAC-GGCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 154614 0.72 0.252385
Target:  5'- cCGCGCUGgCGuacucggaCCAGCgGCCGCGGGGc -3'
miRNA:   3'- -GCGCGGCgGC--------GGUCGaCGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 162214 0.72 0.264023
Target:  5'- uCGCGCUGCCuGCgAcGCggGCCGgCGGggGg -3'
miRNA:   3'- -GCGCGGCGG-CGgU-CGa-CGGC-GCCuuC- -5'
24349 3' -64.4 NC_005264.1 + 43187 0.72 0.264023
Target:  5'- uCGCGCUGCCuGCgAcGCggGCCGgCGGggGg -3'
miRNA:   3'- -GCGCGGCGG-CGgU-CGa-CGGC-GCCuuC- -5'
24349 3' -64.4 NC_005264.1 + 121114 0.72 0.264023
Target:  5'- -aCGCCGCUGCCGcCUGgCGCGaGAAGa -3'
miRNA:   3'- gcGCGGCGGCGGUcGACgGCGC-CUUC- -5'
24349 3' -64.4 NC_005264.1 + 83104 0.71 0.2694
Target:  5'- aGCGCagguguaCGCCGaCgGGCgccaagGCCGCGGAGGc -3'
miRNA:   3'- gCGCG-------GCGGC-GgUCGa-----CGGCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 33849 0.71 0.270003
Target:  5'- gCGCGCCGCgGCagAGCUGaagaaCGUGGAGc -3'
miRNA:   3'- -GCGCGGCGgCGg-UCGACg----GCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 30375 0.71 0.276092
Target:  5'- gGCGCCGCCGCgucgcgucuCGGCgGCgGCGGu-- -3'
miRNA:   3'- gCGCGGCGGCG---------GUCGaCGgCGCCuuc -5'
24349 3' -64.4 NC_005264.1 + 149402 0.71 0.276092
Target:  5'- gGCGCCGCCGCgucgcgucuCGGCgGCgGCGGu-- -3'
miRNA:   3'- gCGCGGCGGCG---------GUCGaCGgCGCCuuc -5'
24349 3' -64.4 NC_005264.1 + 10990 0.71 0.276092
Target:  5'- aCGUGUCGCCGCCGGa-GCgGCGGc-- -3'
miRNA:   3'- -GCGCGGCGGCGGUCgaCGgCGCCuuc -5'
24349 3' -64.4 NC_005264.1 + 107020 0.71 0.278558
Target:  5'- cCGCGCCGCCaCCGgcugaauguugaguuGCUcucguaGCCGCGGAGc -3'
miRNA:   3'- -GCGCGGCGGcGGU---------------CGA------CGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 106523 0.71 0.28229
Target:  5'- gCGCGaCGgCGgCAGCgcgGCCGCGGAGu -3'
miRNA:   3'- -GCGCgGCgGCgGUCGa--CGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 34752 0.71 0.28229
Target:  5'- gCGCGCCgGUCGCC-GCUGUCGCuacacGAAGa -3'
miRNA:   3'- -GCGCGG-CGGCGGuCGACGGCGc----CUUC- -5'
24349 3' -64.4 NC_005264.1 + 159767 0.71 0.288598
Target:  5'- uCG-GCCGCCGCCAGUcGCgGCGaGAc- -3'
miRNA:   3'- -GCgCGGCGGCGGUCGaCGgCGC-CUuc -5'
24349 3' -64.4 NC_005264.1 + 40741 0.71 0.288598
Target:  5'- uCG-GCCGCCGCCAGUcGCgGCGaGAc- -3'
miRNA:   3'- -GCgCGGCGGCGGUCGaCGgCGC-CUuc -5'
24349 3' -64.4 NC_005264.1 + 122056 0.71 0.295016
Target:  5'- gGCuCCGCUcUCGGC-GCCGCGGAAGa -3'
miRNA:   3'- gCGcGGCGGcGGUCGaCGGCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 36816 0.71 0.295016
Target:  5'- --aGCCGCCGCgGGCcacGCCGaGGAGGa -3'
miRNA:   3'- gcgCGGCGGCGgUCGa--CGGCgCCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.