miRNA display CGI


Results 41 - 60 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24349 3' -64.4 NC_005264.1 + 4727 0.66 0.517789
Target:  5'- aGaCGCCGCUGCCcGCcgaGCCGgcgucCGGggGu -3'
miRNA:   3'- gC-GCGGCGGCGGuCGa--CGGC-----GCCuuC- -5'
24349 3' -64.4 NC_005264.1 + 135673 0.66 0.517789
Target:  5'- uGCGCCGCCGUgaagaCGGCcUGCa-CGGAc- -3'
miRNA:   3'- gCGCGGCGGCG-----GUCG-ACGgcGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 102865 0.66 0.517789
Target:  5'- uCGCGgccaCCGCCGCgUGGCUGagcggCGCGGAc- -3'
miRNA:   3'- -GCGC----GGCGGCG-GUCGACg----GCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 123753 0.66 0.517789
Target:  5'- aGaCGCCGCUGCCcGCcgaGCCGgcgucCGGggGu -3'
miRNA:   3'- gC-GCGGCGGCGGuCGa--CGGC-----GCCuuC- -5'
24349 3' -64.4 NC_005264.1 + 138439 0.66 0.517789
Target:  5'- uCGCGCUGCuCGCgAucuaccucGCcGCCGgGGGAGc -3'
miRNA:   3'- -GCGCGGCG-GCGgU--------CGaCGGCgCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 34169 0.67 0.508584
Target:  5'- cCGCGCCcugcagucacaGCUGCuggaCAGCaGCCGCGGcauGGa -3'
miRNA:   3'- -GCGCGG-----------CGGCG----GUCGaCGGCGCCu--UC- -5'
24349 3' -64.4 NC_005264.1 + 100584 0.67 0.508584
Target:  5'- aGCGCCGUCGUuguaCAGcCUGUgGCGGc-- -3'
miRNA:   3'- gCGCGGCGGCG----GUC-GACGgCGCCuuc -5'
24349 3' -64.4 NC_005264.1 + 125258 0.67 0.508584
Target:  5'- cCGCgGCCGCCGCgAGacuUGCCGCc---- -3'
miRNA:   3'- -GCG-CGGCGGCGgUCg--ACGGCGccuuc -5'
24349 3' -64.4 NC_005264.1 + 126029 0.67 0.508584
Target:  5'- cCGCGCC-UCGCCuGC-GCCGCaGAGa -3'
miRNA:   3'- -GCGCGGcGGCGGuCGaCGGCGcCUUc -5'
24349 3' -64.4 NC_005264.1 + 6231 0.67 0.508584
Target:  5'- cCGCgGCCGCCGCgAGacuUGCCGCc---- -3'
miRNA:   3'- -GCG-CGGCGGCGgUCg--ACGGCGccuuc -5'
24349 3' -64.4 NC_005264.1 + 87620 0.67 0.508584
Target:  5'- aCG-GCCGCCGCgCAgggccgauGCaGCCGCGuGggGc -3'
miRNA:   3'- -GCgCGGCGGCG-GU--------CGaCGGCGC-CuuC- -5'
24349 3' -64.4 NC_005264.1 + 144798 0.67 0.49945
Target:  5'- gGCGCCGCCGCUucGCgucgGCaCGCacuuggugucGGAAa -3'
miRNA:   3'- gCGCGGCGGCGGu-CGa---CG-GCG----------CCUUc -5'
24349 3' -64.4 NC_005264.1 + 84951 0.67 0.49945
Target:  5'- gGCGCCgggugcucgcuuGCgGCCAgGCUGCUGCGuuAGc -3'
miRNA:   3'- gCGCGG------------CGgCGGU-CGACGGCGCcuUC- -5'
24349 3' -64.4 NC_005264.1 + 78698 0.67 0.49945
Target:  5'- uGCGaCCacuucccgggGCuCGCgAGCUGCCGCGaGAAu -3'
miRNA:   3'- gCGC-GG----------CG-GCGgUCGACGGCGC-CUUc -5'
24349 3' -64.4 NC_005264.1 + 95368 0.67 0.49945
Target:  5'- gGCGCgUGCCGCCAaaCUGCCaggcGUGGGAc -3'
miRNA:   3'- gCGCG-GCGGCGGUc-GACGG----CGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 146774 0.67 0.49945
Target:  5'- aGCGCCGCgCGgCGGUucucggUGCgGCGGuguGGa -3'
miRNA:   3'- gCGCGGCG-GCgGUCG------ACGgCGCCu--UC- -5'
24349 3' -64.4 NC_005264.1 + 92691 0.67 0.49854
Target:  5'- aCGCgGCCGCCuCCuggAGCUuauugccGCaCGCGGGAGu -3'
miRNA:   3'- -GCG-CGGCGGcGG---UCGA-------CG-GCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 93039 0.67 0.490388
Target:  5'- cCGCGCCGaauGCguGCUGCUGCGc--- -3'
miRNA:   3'- -GCGCGGCgg-CGguCGACGGCGCcuuc -5'
24349 3' -64.4 NC_005264.1 + 124463 0.67 0.490388
Target:  5'- gGCGUCGCCGCU--CUcGCCGgaGGAGGu -3'
miRNA:   3'- gCGCGGCGGCGGucGA-CGGCg-CCUUC- -5'
24349 3' -64.4 NC_005264.1 + 122624 0.67 0.490388
Target:  5'- gCGCGaagaauuaCCGCCGCgGGggGCCGC-GAGGg -3'
miRNA:   3'- -GCGC--------GGCGGCGgUCgaCGGCGcCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.