Results 61 - 80 of 226 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24349 | 3' | -64.4 | NC_005264.1 | + | 112253 | 0.67 | 0.490388 |
Target: 5'- aGCGCCggGCUGCuCAGC-GCCGCGu--- -3' miRNA: 3'- gCGCGG--CGGCG-GUCGaCGGCGCcuuc -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 3597 | 0.67 | 0.490388 |
Target: 5'- gCGCGaagaauuaCCGCCGCgGGggGCCGC-GAGGg -3' miRNA: 3'- -GCGC--------GGCGGCGgUCgaCGGCGcCUUC- -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 93039 | 0.67 | 0.490388 |
Target: 5'- cCGCGCCGaauGCguGCUGCUGCGc--- -3' miRNA: 3'- -GCGCGGCgg-CGguCGACGGCGCcuuc -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 124463 | 0.67 | 0.490388 |
Target: 5'- gGCGUCGCCGCU--CUcGCCGgaGGAGGu -3' miRNA: 3'- gCGCGGCGGCGGucGA-CGGCg-CCUUC- -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 124563 | 0.67 | 0.484988 |
Target: 5'- aCGuCGCCGCCGuCCGGgaCUGacgucaccgacagcaCCGCGGAc- -3' miRNA: 3'- -GC-GCGGCGGC-GGUC--GAC---------------GGCGCCUuc -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 160647 | 0.67 | 0.484988 |
Target: 5'- gCGCGCaugGgCGCCGGCaauggaggggcaacGCCGCGGGGa -3' miRNA: 3'- -GCGCGg--CgGCGGUCGa-------------CGGCGCCUUc -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 5536 | 0.67 | 0.484988 |
Target: 5'- aCGuCGCCGCCGuCCGGgaCUGacgucaccgacagcaCCGCGGAc- -3' miRNA: 3'- -GC-GCGGCGGC-GGUC--GAC---------------GGCGCCUuc -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 129565 | 0.67 | 0.481404 |
Target: 5'- gGCGCCGCCcUCAGg-GgCGCGGAu- -3' miRNA: 3'- gCGCGGCGGcGGUCgaCgGCGCCUuc -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 158758 | 0.67 | 0.481404 |
Target: 5'- cCGCGaCGCCGCCcgugcaacAGCcccGCUGuCGGGAGa -3' miRNA: 3'- -GCGCgGCGGCGG--------UCGa--CGGC-GCCUUC- -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 126077 | 0.67 | 0.481404 |
Target: 5'- gCGCGCaagcggcgacggCGCCgGCCGGCgccgucgcGCUGCGGGGa -3' miRNA: 3'- -GCGCG------------GCGG-CGGUCGa-------CGGCGCCUUc -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 92989 | 0.67 | 0.481404 |
Target: 5'- aCGCGCCGCaGCacgCGGCcGuaGCGGggGc -3' miRNA: 3'- -GCGCGGCGgCG---GUCGaCggCGCCuuC- -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 26650 | 0.67 | 0.481404 |
Target: 5'- aGCGCgG-CGCCGGC-GCCGCGcuAGa -3' miRNA: 3'- gCGCGgCgGCGGUCGaCGGCGCcuUC- -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 39732 | 0.67 | 0.481404 |
Target: 5'- cCGCGaCGCCGCCcgugcaacAGCcccGCUGuCGGGAGa -3' miRNA: 3'- -GCGCgGCGGCGG--------UCGa--CGGC-GCCUUC- -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 21239 | 0.67 | 0.481404 |
Target: 5'- cCGCGuuGaCGaCGGCUcgagugugcgcGCCGCGGAGGu -3' miRNA: 3'- -GCGCggCgGCgGUCGA-----------CGGCGCCUUC- -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 7050 | 0.67 | 0.481404 |
Target: 5'- gCGCGCaagcggcgacggCGCCgGCCGGCgccgucgcGCUGCGGGGa -3' miRNA: 3'- -GCGCG------------GCGG-CGGUCGa-------CGGCGCCUUc -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 120771 | 0.67 | 0.481404 |
Target: 5'- gCGCaGCUGaCGCCAcGC-GCCGCGGGc- -3' miRNA: 3'- -GCG-CGGCgGCGGU-CGaCGGCGCCUuc -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 94540 | 0.67 | 0.481404 |
Target: 5'- aGCGgCGCCGCacugAGaaaUGCCGCuGggGa -3' miRNA: 3'- gCGCgGCGGCGg---UCg--ACGGCGcCuuC- -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 10538 | 0.67 | 0.481404 |
Target: 5'- gGCGCCGCCcUCAGg-GgCGCGGAu- -3' miRNA: 3'- gCGCGGCGGcGGUCgaCgGCGCCUuc -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 13889 | 0.67 | 0.481404 |
Target: 5'- aCGCGUCGUCGCCuGCaGgCGaCGGGGc -3' miRNA: 3'- -GCGCGGCGGCGGuCGaCgGC-GCCUUc -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 136193 | 0.67 | 0.481404 |
Target: 5'- aGCGCgG-CGCCGGC-GCCGCGcuAAGg -3' miRNA: 3'- gCGCGgCgGCGGUCGaCGGCGCc-UUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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