miRNA display CGI


Results 21 - 40 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24349 3' -64.4 NC_005264.1 + 2854 0.73 0.200427
Target:  5'- uCGCGCCGUCGCCcGCUGCgGCu---- -3'
miRNA:   3'- -GCGCGGCGGCGGuCGACGgCGccuuc -5'
24349 3' -64.4 NC_005264.1 + 69351 0.73 0.200427
Target:  5'- aCGCGCCgGCCGCCAGCaGCgccucagacagCGCGGu-- -3'
miRNA:   3'- -GCGCGG-CGGCGGUCGaCG-----------GCGCCuuc -5'
24349 3' -64.4 NC_005264.1 + 49587 0.73 0.200427
Target:  5'- gGCGCaCGCCGCCGGCgaccagGaCGaCGGggGg -3'
miRNA:   3'- gCGCG-GCGGCGGUCGa-----CgGC-GCCuuC- -5'
24349 3' -64.4 NC_005264.1 + 148497 0.73 0.200427
Target:  5'- aCGCGCUgGUCGCguuggCGGCgagcGCCGCGGAAGa -3'
miRNA:   3'- -GCGCGG-CGGCG-----GUCGa---CGGCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 121880 0.73 0.200427
Target:  5'- uCGCGCCGUCGCCcGCUGCgGCu---- -3'
miRNA:   3'- -GCGCGGCGGCGGuCGACGgCGccuuc -5'
24349 3' -64.4 NC_005264.1 + 145925 0.73 0.205173
Target:  5'- -aCGCCGCCGCCAucguccGCgGCCGaCGGGAa -3'
miRNA:   3'- gcGCGGCGGCGGU------CGaCGGC-GCCUUc -5'
24349 3' -64.4 NC_005264.1 + 139804 0.73 0.210016
Target:  5'- aCGCG-UGCCGUCGGCcGUCGCGGGAc -3'
miRNA:   3'- -GCGCgGCGGCGGUCGaCGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 26498 0.73 0.210016
Target:  5'- uGCGgCGCCGaaCCAGCUucuacGCCGCGGcGGg -3'
miRNA:   3'- gCGCgGCGGC--GGUCGA-----CGGCGCCuUC- -5'
24349 3' -64.4 NC_005264.1 + 146273 0.73 0.214957
Target:  5'- uGCGCCGCCGCCccGGC-GCCGCc---- -3'
miRNA:   3'- gCGCGGCGGCGG--UCGaCGGCGccuuc -5'
24349 3' -64.4 NC_005264.1 + 67490 0.73 0.214957
Target:  5'- aCGCGCCGcCCGUCGGCcccauUGCCuCGGAu- -3'
miRNA:   3'- -GCGCGGC-GGCGGUCG-----ACGGcGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 70668 0.73 0.224619
Target:  5'- cCGCGgCGCCGCCGGCaGgcaauuuuuacgcCCGCGGgcGa -3'
miRNA:   3'- -GCGCgGCGGCGGUCGaC-------------GGCGCCuuC- -5'
24349 3' -64.4 NC_005264.1 + 120704 0.73 0.225138
Target:  5'- uCGCGCCGaCaaaGCCGGCgGUCggGCGGAGGa -3'
miRNA:   3'- -GCGCGGC-Gg--CGGUCGaCGG--CGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 58309 0.73 0.225138
Target:  5'- gCGCGCU-UCGCCGGCUGCC-CGcGAAGg -3'
miRNA:   3'- -GCGCGGcGGCGGUCGACGGcGC-CUUC- -5'
24349 3' -64.4 NC_005264.1 + 68434 0.73 0.225138
Target:  5'- uCGCGCaguccgCGCCGCgGuCUGCgCGCGGAGGg -3'
miRNA:   3'- -GCGCG------GCGGCGgUcGACG-GCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 131996 0.72 0.228797
Target:  5'- gCGCGCCGCCGCCGacgacgacGCgaGCCcguucgagcacgagGCGGAAa -3'
miRNA:   3'- -GCGCGGCGGCGGU--------CGa-CGG--------------CGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 22068 0.72 0.23038
Target:  5'- aGCGCCGCCGCCGGaaggcgguucUUGCaacaauauUGCGGAAc -3'
miRNA:   3'- gCGCGGCGGCGGUC----------GACG--------GCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 103128 0.72 0.241174
Target:  5'- gGCGCgguaGCCGCCGGCgcgGCgCGCGGc-- -3'
miRNA:   3'- gCGCGg---CGGCGGUCGa--CG-GCGCCuuc -5'
24349 3' -64.4 NC_005264.1 + 55905 0.72 0.241174
Target:  5'- uGCgGCCGCCG-CAGCUGUCGaGGAAa -3'
miRNA:   3'- gCG-CGGCGGCgGUCGACGGCgCCUUc -5'
24349 3' -64.4 NC_005264.1 + 55643 0.72 0.241174
Target:  5'- gCGCGCCGCCGCCuuuaguuuuGGCgGCCcCGGu-- -3'
miRNA:   3'- -GCGCGGCGGCGG---------UCGaCGGcGCCuuc -5'
24349 3' -64.4 NC_005264.1 + 64515 0.72 0.241174
Target:  5'- cCGCGCUGUucUGUCcGCgccGCCGCGGAGGg -3'
miRNA:   3'- -GCGCGGCG--GCGGuCGa--CGGCGCCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.