miRNA display CGI


Results 21 - 40 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24349 3' -64.4 NC_005264.1 + 13205 0.68 0.436905
Target:  5'- cCGuCGCCGCCGCCgucgccgGGCUGCUucuccCGaGAAGc -3'
miRNA:   3'- -GC-GCGGCGGCGG-------UCGACGGc----GC-CUUC- -5'
24349 3' -64.4 NC_005264.1 + 13264 0.72 0.246727
Target:  5'- aGCaGCCccccuCCGCCcggGGCUGuCCGCGGGAGa -3'
miRNA:   3'- gCG-CGGc----GGCGG---UCGAC-GGCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 13425 0.68 0.429299
Target:  5'- gCGCGaCCGCCGCCGccgagacgcgacGCgGCgGCGccGAAGg -3'
miRNA:   3'- -GCGC-GGCGGCGGU------------CGaCGgCGC--CUUC- -5'
24349 3' -64.4 NC_005264.1 + 13889 0.67 0.481404
Target:  5'- aCGCGUCGUCGCCuGCaGgCGaCGGGGc -3'
miRNA:   3'- -GCGCGGCGGCGGuCGaCgGC-GCCUUc -5'
24349 3' -64.4 NC_005264.1 + 17683 0.67 0.472501
Target:  5'- -aCGCCgGCuCGUCAGCcGCUGgCGGAGGa -3'
miRNA:   3'- gcGCGG-CG-GCGGUCGaCGGC-GCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 18060 0.71 0.295016
Target:  5'- gGCGCCGCgaGCCAGg-GCgCGCGGGc- -3'
miRNA:   3'- gCGCGGCGg-CGGUCgaCG-GCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 18163 0.69 0.365291
Target:  5'- uCGuCGUCGgCGCCA-CUGUCGUGGggGc -3'
miRNA:   3'- -GC-GCGGCgGCGGUcGACGGCGCCuuC- -5'
24349 3' -64.4 NC_005264.1 + 19536 0.7 0.335853
Target:  5'- aCG-GCCGCCGCCAacGUUGCCGgaGcGAGGu -3'
miRNA:   3'- -GCgCGGCGGCGGU--CGACGGCg-C-CUUC- -5'
24349 3' -64.4 NC_005264.1 + 20151 0.65 0.573283
Target:  5'- gGCG-CGCCGCCGGC-GCCcaagaucGCGGc-- -3'
miRNA:   3'- gCGCgGCGGCGGUCGaCGG-------CGCCuuc -5'
24349 3' -64.4 NC_005264.1 + 20350 0.78 0.101659
Target:  5'- aCGCGCCG-UGCCAGC-GUCGUGGGAGa -3'
miRNA:   3'- -GCGCGGCgGCGGUCGaCGGCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 21239 0.67 0.481404
Target:  5'- cCGCGuuGaCGaCGGCUcgagugugcgcGCCGCGGAGGu -3'
miRNA:   3'- -GCGCggCgGCgGUCGA-----------CGGCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 22068 0.72 0.23038
Target:  5'- aGCGCCGCCGCCGGaaggcgguucUUGCaacaauauUGCGGAAc -3'
miRNA:   3'- gCGCGGCGGCGGUC----------GACG--------GCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 22142 0.66 0.564708
Target:  5'- gCGCGaCGCgCGCCuuagauuGC-GCCGCGGGc- -3'
miRNA:   3'- -GCGCgGCG-GCGGu------CGaCGGCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 23736 0.7 0.314934
Target:  5'- -aCGCCGCCGCuCAGCagcaGCCGCGa--- -3'
miRNA:   3'- gcGCGGCGGCG-GUCGa---CGGCGCcuuc -5'
24349 3' -64.4 NC_005264.1 + 24245 0.68 0.429299
Target:  5'- uGCaCC-CCaCC-GCUGCCGCGGAAGu -3'
miRNA:   3'- gCGcGGcGGcGGuCGACGGCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 25556 0.81 0.059886
Target:  5'- cCGCGUCGCCGCCAaC-GCCGCGGAAu -3'
miRNA:   3'- -GCGCGGCGGCGGUcGaCGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 25604 0.68 0.41268
Target:  5'- aGCGCCGg-GCCGGC-GuuGCGGAAc -3'
miRNA:   3'- gCGCGGCggCGGUCGaCggCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 26362 0.7 0.335853
Target:  5'- uGCGCCGCgGCaGGCUG-CGCGGc-- -3'
miRNA:   3'- gCGCGGCGgCGgUCGACgGCGCCuuc -5'
24349 3' -64.4 NC_005264.1 + 26498 0.73 0.210016
Target:  5'- uGCGgCGCCGaaCCAGCUucuacGCCGCGGcGGg -3'
miRNA:   3'- gCGCgGCGGC--GGUCGA-----CGGCGCCuUC- -5'
24349 3' -64.4 NC_005264.1 + 26650 0.67 0.481404
Target:  5'- aGCGCgG-CGCCGGC-GCCGCGcuAGa -3'
miRNA:   3'- gCGCGgCgGCGGUCGaCGGCGCcuUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.