miRNA display CGI


Results 61 - 80 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24349 5' -54.9 NC_005264.1 + 1168 0.67 0.911394
Target:  5'- --aGUCUgccgGCGcGCGAUGGGGGuacGCAGCg -3'
miRNA:   3'- cugCAGG----UGC-CGUUGCCUCUu--CGUCG- -5'
24349 5' -54.9 NC_005264.1 + 99872 0.67 0.911394
Target:  5'- --aG-CCGCGGUGGCGGGGAAGUc-- -3'
miRNA:   3'- cugCaGGUGCCGUUGCCUCUUCGucg -5'
24349 5' -54.9 NC_005264.1 + 56458 0.67 0.907759
Target:  5'- cGGCGUacagaCACgGGUAgaacGCGGAGAaaucuaaccgcgccaAGCGGCa -3'
miRNA:   3'- -CUGCAg----GUG-CCGU----UGCCUCU---------------UCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 16477 0.67 0.905289
Target:  5'- cGACGcagCCGCGGUggccuGCGGGgucGAGGCAcGCc -3'
miRNA:   3'- -CUGCa--GGUGCCGu----UGCCU---CUUCGU-CG- -5'
24349 5' -54.9 NC_005264.1 + 148249 0.67 0.905289
Target:  5'- cGCGUUCGCGGCGGCGuuucacGGGAcagauuugcccGGCGGg -3'
miRNA:   3'- cUGCAGGUGCCGUUGC------CUCU-----------UCGUCg -5'
24349 5' -54.9 NC_005264.1 + 53966 0.67 0.905289
Target:  5'- uGGCGUCacuuauUGGCGcCGGAacGGCGGCg -3'
miRNA:   3'- -CUGCAGgu----GCCGUuGCCUcuUCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 72277 0.67 0.905289
Target:  5'- aGGCGUaCUggcCGGCAACgaGGAGAcGCGGUg -3'
miRNA:   3'- -CUGCA-GGu--GCCGUUG--CCUCUuCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 156583 0.67 0.904665
Target:  5'- cGACGgcggCgACGaccGCGACGGAGGcggcaagucucgcGGCGGCc -3'
miRNA:   3'- -CUGCa---GgUGC---CGUUGCCUCU-------------UCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 37556 0.67 0.904665
Target:  5'- cGACGgcggCgACGaccGCGACGGAGGcggcaagucucgcGGCGGCc -3'
miRNA:   3'- -CUGCa---GgUGC---CGUUGCCUCU-------------UCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 131572 0.67 0.903411
Target:  5'- cAUGUgCGCGGCAccuggcgccuagguGUGGAGGgAGCGGCg -3'
miRNA:   3'- cUGCAgGUGCCGU--------------UGCCUCU-UCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 43191 0.67 0.898948
Target:  5'- cACGUCCugGGUu-CGGccguAGAGGCugAGCc -3'
miRNA:   3'- cUGCAGGugCCGuuGCC----UCUUCG--UCG- -5'
24349 5' -54.9 NC_005264.1 + 26360 0.67 0.898948
Target:  5'- uGGCGUUC-CGGCcguauGACGaGAGGAGUcGCg -3'
miRNA:   3'- -CUGCAGGuGCCG-----UUGC-CUCUUCGuCG- -5'
24349 5' -54.9 NC_005264.1 + 71849 0.67 0.898948
Target:  5'- cGACGcgUCGCGGCGGCGGuGuuccgcgacGGCAcGCg -3'
miRNA:   3'- -CUGCa-GGUGCCGUUGCCuCu--------UCGU-CG- -5'
24349 5' -54.9 NC_005264.1 + 61862 0.68 0.892375
Target:  5'- cGGCGcUCCA-GGCAugGGAG--GCAGa -3'
miRNA:   3'- -CUGC-AGGUgCCGUugCCUCuuCGUCg -5'
24349 5' -54.9 NC_005264.1 + 16562 0.68 0.892375
Target:  5'- cGCGguggGCGGCGcCGGGGcGGCGGCg -3'
miRNA:   3'- cUGCagg-UGCCGUuGCCUCuUCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 19099 0.68 0.892375
Target:  5'- gGACugcaCCGCGGCGgcGCGGAGAcgAGCAc- -3'
miRNA:   3'- -CUGca--GGUGCCGU--UGCCUCU--UCGUcg -5'
24349 5' -54.9 NC_005264.1 + 140785 0.68 0.892375
Target:  5'- -cCGUaCCACGGa---GGGGAcAGCGGCa -3'
miRNA:   3'- cuGCA-GGUGCCguugCCUCU-UCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 100483 0.68 0.885573
Target:  5'- cGGCGgCCAgGGCccUGGAGggGUuGCg -3'
miRNA:   3'- -CUGCaGGUgCCGuuGCCUCuuCGuCG- -5'
24349 5' -54.9 NC_005264.1 + 66993 0.68 0.885573
Target:  5'- gGGCGagCaACGGCGagugcugccuggACGGAGcGGCGGCc -3'
miRNA:   3'- -CUGCagG-UGCCGU------------UGCCUCuUCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 83720 0.68 0.885573
Target:  5'- cGGCGgcuagguaCGCGGCGGCaGAGAugcccucuGCGGCa -3'
miRNA:   3'- -CUGCag------GUGCCGUUGcCUCUu-------CGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.