miRNA display CGI


Results 41 - 60 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24349 5' -54.9 NC_005264.1 + 65391 0.66 0.931908
Target:  5'- cGGCGcuacgucuaucagaUCCGCGGCGGCGccc--GCAGCg -3'
miRNA:   3'- -CUGC--------------AGGUGCCGUUGCcucuuCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 83685 0.67 0.930367
Target:  5'- --aGUCUACcGCGaaaagaaccagaaccACGGAGAAGgGGCa -3'
miRNA:   3'- cugCAGGUGcCGU---------------UGCCUCUUCgUCG- -5'
24349 5' -54.9 NC_005264.1 + 29225 0.67 0.928279
Target:  5'- cGAUGgggagCCAgCGGUcgaggagcacAGCGGAGAcuGCGGCg -3'
miRNA:   3'- -CUGCa----GGU-GCCG----------UUGCCUCUu-CGUCG- -5'
24349 5' -54.9 NC_005264.1 + 104281 0.67 0.928279
Target:  5'- -uUGUCUcccugaagcGCGGuCGGcCGGAGGAGguGCa -3'
miRNA:   3'- cuGCAGG---------UGCC-GUU-GCCUCUUCguCG- -5'
24349 5' -54.9 NC_005264.1 + 102235 0.67 0.928279
Target:  5'- -cCGgcugCCGCGGCAuacGAGAAGgGGCu -3'
miRNA:   3'- cuGCa---GGUGCCGUugcCUCUUCgUCG- -5'
24349 5' -54.9 NC_005264.1 + 77774 0.67 0.92289
Target:  5'- cGGCGgaCCugGGgAACGGGGcAGGCcuuguAGCg -3'
miRNA:   3'- -CUGCa-GGugCCgUUGCCUC-UUCG-----UCG- -5'
24349 5' -54.9 NC_005264.1 + 81888 0.67 0.92289
Target:  5'- uGGCGcCUugGCGGCGAUGGGcGGGCgAGCc -3'
miRNA:   3'- -CUGCaGG--UGCCGUUGCCUcUUCG-UCG- -5'
24349 5' -54.9 NC_005264.1 + 64864 0.67 0.92289
Target:  5'- --aGUCCGgGGCug-GGAGAuugcccgcaaGGCGGCg -3'
miRNA:   3'- cugCAGGUgCCGuugCCUCU----------UCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 79619 0.67 0.92289
Target:  5'- aGACGcCCACGcGCAACGGcccauaaAAGC-GCa -3'
miRNA:   3'- -CUGCaGGUGC-CGUUGCCuc-----UUCGuCG- -5'
24349 5' -54.9 NC_005264.1 + 45518 0.67 0.921227
Target:  5'- gGACGacCCGCGcacgcuucucagucGCAcGCGGAGA-GCGGCa -3'
miRNA:   3'- -CUGCa-GGUGC--------------CGU-UGCCUCUuCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 140249 0.67 0.917261
Target:  5'- uGAgGUCU-CGGCGACGGuGAcGCcGCu -3'
miRNA:   3'- -CUgCAGGuGCCGUUGCCuCUuCGuCG- -5'
24349 5' -54.9 NC_005264.1 + 95434 0.67 0.917261
Target:  5'- uGC-UCUGCGGUugccCGGAGAuGCGGCg -3'
miRNA:   3'- cUGcAGGUGCCGuu--GCCUCUuCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 51838 0.67 0.917261
Target:  5'- uGACGggCACGGUcAUGGAGc-GCAGUa -3'
miRNA:   3'- -CUGCagGUGCCGuUGCCUCuuCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 18557 0.67 0.917261
Target:  5'- cGGCGUCagucggaGCGGCAuccgcCGGcccaAGGCAGCg -3'
miRNA:   3'- -CUGCAGg------UGCCGUu----GCCuc--UUCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 76782 0.67 0.917261
Target:  5'- aGACGUCCACGuuAccguCGGcGAAGUuuAGCa -3'
miRNA:   3'- -CUGCAGGUGCcgUu---GCCuCUUCG--UCG- -5'
24349 5' -54.9 NC_005264.1 + 43681 0.67 0.917261
Target:  5'- cGGCGUUaagGCGGCcGCcGGGGAGCGGg -3'
miRNA:   3'- -CUGCAGg--UGCCGuUGcCUCUUCGUCg -5'
24349 5' -54.9 NC_005264.1 + 106529 0.67 0.917261
Target:  5'- cGGCGgcagCGCGGCcGCGGAguuuuucgcgaGAAGCgAGCa -3'
miRNA:   3'- -CUGCag--GUGCCGuUGCCU-----------CUUCG-UCG- -5'
24349 5' -54.9 NC_005264.1 + 162707 0.67 0.917261
Target:  5'- cGGCGUUaagGCGGCcGCcGGGGAGCGGg -3'
miRNA:   3'- -CUGCAGg--UGCCGuUGcCUCUUCGUCg -5'
24349 5' -54.9 NC_005264.1 + 120195 0.67 0.911394
Target:  5'- --aGUCUgccgGCGcGCGAUGGGGGuacGCAGCg -3'
miRNA:   3'- cugCAGG----UGC-CGUUGCCUCUu--CGUCG- -5'
24349 5' -54.9 NC_005264.1 + 13691 0.67 0.911394
Target:  5'- -cCG-CCAUGGCccAgGGAGAacuGGCAGCu -3'
miRNA:   3'- cuGCaGGUGCCGu-UgCCUCU---UCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.