miRNA display CGI


Results 41 - 60 of 167 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24349 5' -54.9 NC_005264.1 + 6425 0.7 0.805208
Target:  5'- cACGUacacucUCGCGGCGgcgucgcugGCGGAGAacuccucGGCGGCg -3'
miRNA:   3'- cUGCA------GGUGCCGU---------UGCCUCU-------UCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 125452 0.7 0.805208
Target:  5'- cACGUacacucUCGCGGCGgcgucgcugGCGGAGAacuccucGGCGGCg -3'
miRNA:   3'- cUGCA------GGUGCCGU---------UGCCUCU-------UCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 76085 0.7 0.806095
Target:  5'- aGCGUCgACGGCucuACGGGcgcGAAcagcGCGGCa -3'
miRNA:   3'- cUGCAGgUGCCGu--UGCCU---CUU----CGUCG- -5'
24349 5' -54.9 NC_005264.1 + 42948 0.7 0.806095
Target:  5'- uACGUCCgggcGCGGCAAcgccuCGGAGggGgaaaGGCc -3'
miRNA:   3'- cUGCAGG----UGCCGUU-----GCCUCuuCg---UCG- -5'
24349 5' -54.9 NC_005264.1 + 158953 0.7 0.806095
Target:  5'- cGGCGUaaacgaCGCGaaGACGGAGAcguggGGCAGCc -3'
miRNA:   3'- -CUGCAg-----GUGCcgUUGCCUCU-----UCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 161975 0.7 0.806095
Target:  5'- uACGUCCgggcGCGGCAAcgccuCGGAGggGgaaaGGCc -3'
miRNA:   3'- cUGCAGG----UGCCGUU-----GCCUCuuCg---UCG- -5'
24349 5' -54.9 NC_005264.1 + 18554 0.7 0.80963
Target:  5'- aGACGUaCCccuguuugcgcGCGGC-ACGGAGAacucggugucggugcGGUAGCa -3'
miRNA:   3'- -CUGCA-GG-----------UGCCGuUGCCUCU---------------UCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 79923 0.7 0.80963
Target:  5'- cGACGUCUGCGGCggacuccacucucaaAugGGAGuuagGGCgaAGCa -3'
miRNA:   3'- -CUGCAGGUGCCG---------------UugCCUCu---UCG--UCG- -5'
24349 5' -54.9 NC_005264.1 + 136416 0.69 0.814883
Target:  5'- -cCGUCCGCGGUcucguagucugaGGCGGAaGAGCAuggGCg -3'
miRNA:   3'- cuGCAGGUGCCG------------UUGCCUcUUCGU---CG- -5'
24349 5' -54.9 NC_005264.1 + 45150 0.69 0.814883
Target:  5'- aGGCG-CCACGacGCGGaggcaGGAGAgcgcGGCAGCg -3'
miRNA:   3'- -CUGCaGGUGC--CGUUg----CCUCU----UCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 39214 0.69 0.823503
Target:  5'- uACGccgCCGCGGCGcugGCGGGGAGGgccuGCg -3'
miRNA:   3'- cUGCa--GGUGCCGU---UGCCUCUUCgu--CG- -5'
24349 5' -54.9 NC_005264.1 + 158241 0.69 0.823503
Target:  5'- uACGccgCCGCGGCGcugGCGGGGAGGgccuGCg -3'
miRNA:   3'- cUGCa--GGUGCCGU---UGCCUCUUCgu--CG- -5'
24349 5' -54.9 NC_005264.1 + 118052 0.69 0.830274
Target:  5'- cGGCGaCCGCGGCGucggcaacgaucgccGCGGGcaccuuugggcgcacGAAGUAGCc -3'
miRNA:   3'- -CUGCaGGUGCCGU---------------UGCCU---------------CUUCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 160655 0.69 0.831949
Target:  5'- gGGCG-CC--GGCAAUGGAGggGCAacGCc -3'
miRNA:   3'- -CUGCaGGugCCGUUGCCUCuuCGU--CG- -5'
24349 5' -54.9 NC_005264.1 + 122206 0.69 0.831949
Target:  5'- cGCGUCgCgACGGC-GCGGGGAAG-GGCu -3'
miRNA:   3'- cUGCAG-G-UGCCGuUGCCUCUUCgUCG- -5'
24349 5' -54.9 NC_005264.1 + 3179 0.69 0.831949
Target:  5'- cGCGUCgCgACGGC-GCGGGGAAG-GGCu -3'
miRNA:   3'- cUGCAG-G-UGCCGuUGCCUCUUCgUCG- -5'
24349 5' -54.9 NC_005264.1 + 33850 0.69 0.840212
Target:  5'- cGCG-CCGCGGCAGagcugaagaacgUGGAgcguccgcucGAGGCGGCg -3'
miRNA:   3'- cUGCaGGUGCCGUU------------GCCU----------CUUCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 132470 0.69 0.840212
Target:  5'- aGACGcgaCGCGGCGGCGccGAAGgGGCu -3'
miRNA:   3'- -CUGCag-GUGCCGUUGCcuCUUCgUCG- -5'
24349 5' -54.9 NC_005264.1 + 13443 0.69 0.840212
Target:  5'- aGACGcgaCGCGGCGGCGccGAAGgGGCu -3'
miRNA:   3'- -CUGCag-GUGCCGUUGCcuCUUCgUCG- -5'
24349 5' -54.9 NC_005264.1 + 13606 0.69 0.840212
Target:  5'- cGGCGaUCGCGGUcgggacGCGGgcAGggGCGGCg -3'
miRNA:   3'- -CUGCaGGUGCCGu-----UGCC--UCuuCGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.