miRNA display CGI


Results 21 - 40 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24349 5' -54.9 NC_005264.1 + 151877 0.73 0.618311
Target:  5'- gGGCGUCUucGCgGGCAucagcuguaugugGCGGAGggGaCGGCg -3'
miRNA:   3'- -CUGCAGG--UG-CCGU-------------UGCCUCuuC-GUCG- -5'
24349 5' -54.9 NC_005264.1 + 34493 0.72 0.670541
Target:  5'- gGACGUUCgGCGGgAAUGG-GggGCGGUg -3'
miRNA:   3'- -CUGCAGG-UGCCgUUGCCuCuuCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 59965 0.72 0.680722
Target:  5'- uGGCGUCCAUGGCGauuACGuGucu-GCAGCg -3'
miRNA:   3'- -CUGCAGGUGCCGU---UGC-CucuuCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 101041 0.72 0.700954
Target:  5'- cGAUGcCCGCGGCc-CGGuGGAGCuGCu -3'
miRNA:   3'- -CUGCaGGUGCCGuuGCCuCUUCGuCG- -5'
24349 5' -54.9 NC_005264.1 + 4168 0.72 0.700954
Target:  5'- cACG-CCGCGGUGugGG-GAAGCGGa -3'
miRNA:   3'- cUGCaGGUGCCGUugCCuCUUCGUCg -5'
24349 5' -54.9 NC_005264.1 + 123195 0.72 0.700954
Target:  5'- cACG-CCGCGGUGugGG-GAAGCGGa -3'
miRNA:   3'- cUGCaGGUGCCGUugCCuCUUCGUCg -5'
24349 5' -54.9 NC_005264.1 + 16622 0.71 0.717971
Target:  5'- cGACG-CCGCGGCGAUuaucaucuuaggguGGAGGacGGUAGUa -3'
miRNA:   3'- -CUGCaGGUGCCGUUG--------------CCUCU--UCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 129743 0.71 0.720954
Target:  5'- cGCGUCaGCGaGCAagcaaGCGGGGAaacgAGCGGCg -3'
miRNA:   3'- cUGCAGgUGC-CGU-----UGCCUCU----UCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 10717 0.71 0.720954
Target:  5'- cGCGUCaGCGaGCAagcaaGCGGGGAaacgAGCGGCg -3'
miRNA:   3'- cUGCAGgUGC-CGU-----UGCCUCU----UCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 16198 0.71 0.730843
Target:  5'- uGCGUCUAcCGGaCAACGGGGGAcGCGccGCg -3'
miRNA:   3'- cUGCAGGU-GCC-GUUGCCUCUU-CGU--CG- -5'
24349 5' -54.9 NC_005264.1 + 65386 0.71 0.740647
Target:  5'- --aGUCuCGCaGGCGACGGAGguGCGGg -3'
miRNA:   3'- cugCAG-GUG-CCGUUGCCUCuuCGUCg -5'
24349 5' -54.9 NC_005264.1 + 159394 0.71 0.74939
Target:  5'- gGGCG-CCACgGGCGGCGGAccccugaGAAGUggGGCg -3'
miRNA:   3'- -CUGCaGGUG-CCGUUGCCU-------CUUCG--UCG- -5'
24349 5' -54.9 NC_005264.1 + 139098 0.71 0.750356
Target:  5'- cGACGU-CGCGGCugcuGCuGAGcGGCGGCg -3'
miRNA:   3'- -CUGCAgGUGCCGu---UGcCUCuUCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 7269 0.71 0.750356
Target:  5'- aGACGUagCCuuGGCGACGGAGAGccccGcCAGUg -3'
miRNA:   3'- -CUGCA--GGugCCGUUGCCUCUU----C-GUCG- -5'
24349 5' -54.9 NC_005264.1 + 117301 0.71 0.759961
Target:  5'- cGAUGccgcucUCCGCGuGCGACuGAGAAGCGuGCg -3'
miRNA:   3'- -CUGC------AGGUGC-CGUUGcCUCUUCGU-CG- -5'
24349 5' -54.9 NC_005264.1 + 91892 0.71 0.759961
Target:  5'- gGugGUuggCCGCGGCAGCGaugggcGGgcGCGGCg -3'
miRNA:   3'- -CugCA---GGUGCCGUUGCc-----UCuuCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 137289 0.7 0.769451
Target:  5'- cGGCGUUgGCGGCGACGcGGgcGUacGGCa -3'
miRNA:   3'- -CUGCAGgUGCCGUUGCcUCuuCG--UCG- -5'
24349 5' -54.9 NC_005264.1 + 17340 0.7 0.778819
Target:  5'- gGACGucugcagugccuUCCGCGGCAGCuGGc--GGCGGCg -3'
miRNA:   3'- -CUGC------------AGGUGCCGUUG-CCucuUCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 22206 0.7 0.788055
Target:  5'- uGGCGUgCGCGGCAAgUGGAGucGUcGCc -3'
miRNA:   3'- -CUGCAgGUGCCGUU-GCCUCuuCGuCG- -5'
24349 5' -54.9 NC_005264.1 + 112655 0.7 0.788055
Target:  5'- -gUGUCCccguagaugACGGCcACGGAGuauuGCGGCa -3'
miRNA:   3'- cuGCAGG---------UGCCGuUGCCUCuu--CGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.