miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24349 5' -54.9 NC_005264.1 + 145517 1.12 0.00234
Target:  5'- aGACGUCCACGGCAACGGAGAAGCAGCg -3'
miRNA:   3'- -CUGCAGGUGCCGUUGCCUCUUCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 88881 0.79 0.326851
Target:  5'- -uCGUCCGCGGCAGCcaAGAAGCAGa -3'
miRNA:   3'- cuGCAGGUGCCGUUGccUCUUCGUCg -5'
24349 5' -54.9 NC_005264.1 + 123545 0.79 0.334341
Target:  5'- gGGCGUCCGCGGaGGgGGAGggGUGGUc -3'
miRNA:   3'- -CUGCAGGUGCCgUUgCCUCuuCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 4518 0.79 0.334341
Target:  5'- gGGCGUCCGCGGaGGgGGAGggGUGGUc -3'
miRNA:   3'- -CUGCAGGUGCCgUUgCCUCuuCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 138593 0.79 0.334341
Target:  5'- uGACuUCCGCGGCAGCGGuGggGU-GCa -3'
miRNA:   3'- -CUGcAGGUGCCGUUGCCuCuuCGuCG- -5'
24349 5' -54.9 NC_005264.1 + 122311 0.79 0.341955
Target:  5'- cACGUcCCugGGCGACGGGGAgugAGgGGCu -3'
miRNA:   3'- cUGCA-GGugCCGUUGCCUCU---UCgUCG- -5'
24349 5' -54.9 NC_005264.1 + 3284 0.79 0.341955
Target:  5'- cACGUcCCugGGCGACGGGGAgugAGgGGCu -3'
miRNA:   3'- cUGCA-GGugCCGUUGCCUCU---UCgUCG- -5'
24349 5' -54.9 NC_005264.1 + 93577 0.79 0.341955
Target:  5'- cGCGccCCAUGGCAGCGGAuGAGGCGcGCg -3'
miRNA:   3'- cUGCa-GGUGCCGUUGCCU-CUUCGU-CG- -5'
24349 5' -54.9 NC_005264.1 + 25614 0.77 0.415986
Target:  5'- cGGCGUUgcggaaCACGGCGGCGGuGggGCcGCg -3'
miRNA:   3'- -CUGCAG------GUGCCGUUGCCuCuuCGuCG- -5'
24349 5' -54.9 NC_005264.1 + 5268 0.76 0.479898
Target:  5'- aGGCGagUCGCGGCcgGACGGcGggGCGGCg -3'
miRNA:   3'- -CUGCa-GGUGCCG--UUGCCuCuuCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 124295 0.76 0.479898
Target:  5'- aGGCGagUCGCGGCcgGACGGcGggGCGGCg -3'
miRNA:   3'- -CUGCa-GGUGCCG--UUGCCuCuuCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 120231 0.75 0.499033
Target:  5'- gGGCGUCCGCGGCcauggcuGCGGGGuuGCAc- -3'
miRNA:   3'- -CUGCAGGUGCCGu------UGCCUCuuCGUcg -5'
24349 5' -54.9 NC_005264.1 + 1204 0.75 0.499033
Target:  5'- gGGCGUCCGCGGCcauggcuGCGGGGuuGCAc- -3'
miRNA:   3'- -CUGCAGGUGCCGu------UGCCUCuuCGUcg -5'
24349 5' -54.9 NC_005264.1 + 60613 0.75 0.537268
Target:  5'- uAUG-CCGCGGCAGcCGGcucgcgcAGGAGCAGCa -3'
miRNA:   3'- cUGCaGGUGCCGUU-GCC-------UCUUCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 149642 0.74 0.578493
Target:  5'- cGACGgCgGCGGCGACGGAuccgcgcGCAGCg -3'
miRNA:   3'- -CUGCaGgUGCCGUUGCCUcuu----CGUCG- -5'
24349 5' -54.9 NC_005264.1 + 128908 0.74 0.578493
Target:  5'- cGGCGcgCCACGGCcuucccagcccuGGCGGcAGAaaGGCGGCg -3'
miRNA:   3'- -CUGCa-GGUGCCG------------UUGCC-UCU--UCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 9882 0.74 0.578493
Target:  5'- cGGCGcgCCACGGCcuucccagcccuGGCGGcAGAaaGGCGGCg -3'
miRNA:   3'- -CUGCa-GGUGCCG------------UUGCC-UCU--UCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 30615 0.74 0.578493
Target:  5'- cGACGgCgGCGGCGACGGAuccgcgcGCAGCg -3'
miRNA:   3'- -CUGCaGgUGCCGUUGCCUcuu----CGUCG- -5'
24349 5' -54.9 NC_005264.1 + 149415 0.74 0.587645
Target:  5'- cGCGUCUcggcgGCGGCGgucgcgcgccgguGCGGAGAGcuGCGGCg -3'
miRNA:   3'- cUGCAGG-----UGCCGU-------------UGCCUCUU--CGUCG- -5'
24349 5' -54.9 NC_005264.1 + 30388 0.74 0.587645
Target:  5'- cGCGUCUcggcgGCGGCGgucgcgcgccgguGCGGAGAGcuGCGGCg -3'
miRNA:   3'- cUGCAGG-----UGCCGU-------------UGCCUCUU--CGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.