miRNA display CGI


Results 21 - 40 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24349 5' -54.9 NC_005264.1 + 152342 0.66 0.938336
Target:  5'- cGACGcUCA-GGCAAuCGGGGAGGaaCAGCu -3'
miRNA:   3'- -CUGCaGGUgCCGUU-GCCUCUUC--GUCG- -5'
24349 5' -54.9 NC_005264.1 + 98320 0.66 0.933427
Target:  5'- ---cUCCGCGGCGgcGCGGAcaGAA-CAGCg -3'
miRNA:   3'- cugcAGGUGCCGU--UGCCU--CUUcGUCG- -5'
24349 5' -54.9 NC_005264.1 + 118174 0.66 0.937856
Target:  5'- ----aCUGCGGCcACGGGGGaaccaacGGCAGCu -3'
miRNA:   3'- cugcaGGUGCCGuUGCCUCU-------UCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 82055 0.66 0.936889
Target:  5'- cGAUGgCUACGGcCAggccagaucucugcGCGGAGggGUcgAGCg -3'
miRNA:   3'- -CUGCaGGUGCC-GU--------------UGCCUCuuCG--UCG- -5'
24349 5' -54.9 NC_005264.1 + 79224 0.66 0.947441
Target:  5'- uGCGUgCA-GGCGGCGGcGggGguGUc -3'
miRNA:   3'- cUGCAgGUgCCGUUGCCuCuuCguCG- -5'
24349 5' -54.9 NC_005264.1 + 79410 0.66 0.951231
Target:  5'- uGGCGaggCCGCGGCGgaacccagcguggGCGGugcggggucuccGGggGCAGa -3'
miRNA:   3'- -CUGCa--GGUGCCGU-------------UGCC------------UCuuCGUCg -5'
24349 5' -54.9 NC_005264.1 + 104703 0.66 0.947441
Target:  5'- uGACGgagcaCCagACGGCuGCGcGAGGucgcgcAGCAGCg -3'
miRNA:   3'- -CUGCa----GG--UGCCGuUGC-CUCU------UCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 126248 0.66 0.951231
Target:  5'- aGGCGuaucuuuauaccaUCCugGGCGuguUGGuccgcGGAGGCGGCc -3'
miRNA:   3'- -CUGC-------------AGGugCCGUu--GCC-----UCUUCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 104453 0.66 0.947441
Target:  5'- aAUGgCCACGGCGAU--AGAGGCGGg -3'
miRNA:   3'- cUGCaGGUGCCGUUGccUCUUCGUCg -5'
24349 5' -54.9 NC_005264.1 + 69152 0.66 0.951641
Target:  5'- cGCGcuacugCCACGGUAagcGCGGuGAucauGGCAGUu -3'
miRNA:   3'- cUGCa-----GGUGCCGU---UGCCuCU----UCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 95340 0.66 0.943007
Target:  5'- gGGCG-CCGCGaaacggacuCGGCGGGGcGGCGGCc -3'
miRNA:   3'- -CUGCaGGUGCc--------GUUGCCUCuUCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 27823 0.66 0.933427
Target:  5'- -cUGUCUGC--CGACGGAGggGCAGa -3'
miRNA:   3'- cuGCAGGUGccGUUGCCUCuuCGUCg -5'
24349 5' -54.9 NC_005264.1 + 116981 0.66 0.933427
Target:  5'- aGACuaCUAUGGCGGCGGAGugucguuGguGCa -3'
miRNA:   3'- -CUGcaGGUGCCGUUGCCUCuu-----CguCG- -5'
24349 5' -54.9 NC_005264.1 + 13317 0.66 0.947441
Target:  5'- gGACGgCCGCGcGgAGCaGGAGGAGaggGGCg -3'
miRNA:   3'- -CUGCaGGUGC-CgUUG-CCUCUUCg--UCG- -5'
24349 5' -54.9 NC_005264.1 + 96888 0.66 0.938336
Target:  5'- aGAUGg-CAUGGCGGCGcgcGAGGGcGCGGCa -3'
miRNA:   3'- -CUGCagGUGCCGUUGC---CUCUU-CGUCG- -5'
24349 5' -54.9 NC_005264.1 + 142969 0.66 0.938336
Target:  5'- cGCGgCCGCGGCGGucucuCGGGcauGAGGCGGg -3'
miRNA:   3'- cUGCaGGUGCCGUU-----GCCU---CUUCGUCg -5'
24349 5' -54.9 NC_005264.1 + 83119 0.66 0.933427
Target:  5'- cGACGggcgCCAaGGCcGCGGAGgcGCGucuGCc -3'
miRNA:   3'- -CUGCa---GGUgCCGuUGCCUCuuCGU---CG- -5'
24349 5' -54.9 NC_005264.1 + 65391 0.66 0.931908
Target:  5'- cGGCGcuacgucuaucagaUCCGCGGCGGCGccc--GCAGCg -3'
miRNA:   3'- -CUGC--------------AGGUGCCGUUGCcucuuCGUCG- -5'
24349 5' -54.9 NC_005264.1 + 8291 0.66 0.938336
Target:  5'- aGGCGcCCgugGGCGACGGGGGcaccugcgccGCGGCg -3'
miRNA:   3'- -CUGCaGGug-CCGUUGCCUCUu---------CGUCG- -5'
24349 5' -54.9 NC_005264.1 + 30492 0.66 0.947441
Target:  5'- uGACGUaCA-GGUAGCGaggccauugcGGGAAGCGGCu -3'
miRNA:   3'- -CUGCAgGUgCCGUUGC----------CUCUUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.